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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Chickpea-1147 Transcript map(Seq-clone)
(Reference Set)
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Correspondences
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Maps LG01
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
CAPS
COS-SNP
SNP
SSR
Other
 
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Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Image Type: PNG JPEG GIF SVG *
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Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
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 Advanced Options

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Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Chickpea - Transcript map with 1147 loci [ View Map Set Info ]
Map Name: LG01
Map Start: 0.00 cM
Map Stop: 61.14 cM
Features by Type:
2 CAPS
54 COS-SNP
52 SNP
11 SSR
119 Total

Map Features

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Items 1 to 25 of 119.       of 5 | Next
Chickpea - Transcript map with 1147 loci - LG01
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TOG905558 COS-SNP 0.00 Chickpea - Hiremath_1328 loci - LG01 TOG905558 1.70 (cM) Automated name-based View Maps
CaM0797 SSR 1.33 Chickpea - Thudi_1291 loci - LG 1 CaM0797 BES-SSR 93.52 (cM) Automated name-based View Maps
TOG915738 COS-SNP 1.98 Chickpea - Hiremath_1328 loci - LG01 TOG915738 4.54 (cM) Automated name-based View Maps
TOG901896 COS-SNP 3.52 Chickpea - Hiremath_1328 loci - LG01 TOG901896 5.98 (cM) Automated name-based View Maps
TOG896385 COS-SNP 5.42 Chickpea - Hiremath_1328 loci - LG01 TOG896385 8.06 (cM) Automated name-based View Maps
CKaM0541 SNP 6.28 Chickpea - Hiremath_1328 loci - LG01 CKaM0541 11.96 (cM) Automated name-based View Maps
TOG901542 COS-SNP 6.28 Chickpea - Hiremath_1328 loci - LG01 TOG901542 8.82 (cM) Automated name-based View Maps
TOG924216 COS-SNP 6.28 Chickpea - Hiremath_1328 loci - LG01 TOG924216 8.82 (cM) Automated name-based View Maps
CKaM0888 SNP 8.84 Chickpea - Hiremath_1328 loci - LG01 CKaM0888 10.99 (cM) Automated name-based View Maps
ICCeM063 SSR 9.85 Chickpea - Hiremath_1328 loci - LG01 ICCeM063 EST-SSR 116.62 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG01 ICCeM063 EST-SSR 95.10 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 1 ICCeM063 EST-SSR 0.00 (cM) Automated name-based View Maps
TOG896074 COS-SNP 12.23 Chickpea - Hiremath_1328 loci - LG01 TOG896074 14.83 (cM) Automated name-based View Maps
TOG902716 COS-SNP 12.23 Chickpea - Hiremath_1328 loci - LG01 TOG902716 14.83 (cM) Automated name-based View Maps
CKaM0947 SNP 13.52 Chickpea - Hiremath_1328 loci - LG01 CKaM0947 15.68 (cM) Automated name-based View Maps
CKaM1140 SNP 14.81 Chickpea - Hiremath_1328 loci - LG01 CKaM1140 17.26 (cM) Automated name-based View Maps
CKaM1645 SNP 14.81 Chickpea - Hiremath_1328 loci - LG01 CKaM1645 17.28 (cM) Automated name-based View Maps
CKaM1424 SNP 15.55 Chickpea - Hiremath_1328 loci - LG01 CKaM1424 18.15 (cM) Automated name-based View Maps
ICCeM055 SSR 16.04 Chickpea - Thudi_1291 loci - LG 1 ICCeM055 EST-SSR 5.67 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG01 ICCeM055 EST-SSR 109.73 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG01 ICCeM055 EST-SSR 88.50 (cM) Automated name-based View Maps
CKaM1767 SNP 19.79 Chickpea - Hiremath_1328 loci - LG01 CKaM1767 102.82 (cM) Automated name-based View Maps
CKaM1904 SNP 20.51 Chickpea - Hiremath_1328 loci - LG01 CKaM1904 23.79 (cM) Automated name-based View Maps
CKaM0928 SNP 20.60 Chickpea - Hiremath_1328 loci - LG01 CKaM0928 23.86 (cM) Automated name-based View Maps
CKaM0784 SNP 20.61 Chickpea - Hiremath_1328 loci - LG01 CKaM0784 23.88 (cM) Automated name-based View Maps
CKaM1905 SNP 20.63 Chickpea - Hiremath_1328 loci - LG01 CKaM1905 23.90 (cM) Automated name-based View Maps
CKaM1914 SNP 20.63 Chickpea - Hiremath_1328 loci - LG01 CKaM1914 23.90 (cM) Automated name-based View Maps
CKaM1474 SNP 20.63 Chickpea - Hiremath_1328 loci - LG01 CKaM1474 23.90 (cM) Automated name-based View Maps
CKaM1082 SNP 20.66 Chickpea - Hiremath_1328 loci - LG01 CKaM1082 23.94 (cM) Automated name-based View Maps