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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cowpea-Version 4
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 8
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cowpea - Cowpea SNP Version 4 [ View Map Set Info ]
Map Name: 8
Map Start: 0.00 cM
Map Stop: 63.86 cM
Features by Type:
72 SNP
72 Total

Map Features

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Items 1 to 25 of 72.       of 3 | Next
Cowpea - Cowpea SNP Version 4 - 8
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
1_0438 SNP 38.24 No other positions
1_0616 SNP 38.24 No other positions
1_1218 SNP 40.40 No other positions
1_0353 SNP 40.48 No other positions
1_0838 SNP 42.11 No other positions
1_0306 SNP 43.45 No other positions
1_1374 SNP 45.26 No other positions
1_0957 SNP 46.41 No other positions
1_0566 SNP 47.09 No other positions
1_0586 SNP 47.23 No other positions
1_1199 SNP 48.37 No other positions
1_0187 SNP 51.34 No other positions
1_0250 SNP 51.35 No other positions
1_1252 SNP 52.88 No other positions
1_1246 SNP 53.62 No other positions
1_0375 SNP 54.31 No other positions
1_0750 SNP 55.22 No other positions
1_0241 SNP 56.75 No other positions
1_0324 SNP 60.09 No other positions
1_1169 SNP 60.46 No other positions
1_1198 SNP 60.64 No other positions
1_0832 SNP 61.19 No other positions
1_0402 SNP 61.28 No other positions
1_0058 SNP 61.56 No other positions
1_1393 SNP 61.56 No other positions