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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cowpea-Version 4
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 9
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cowpea - Cowpea SNP Version 4 [ View Map Set Info ]
Map Name: 9
Map Start: 0.00 cM
Map Stop: 45.15 cM
Features by Type:
78 SNP
78 Total

Map Features

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Items 1 to 25 of 78.       of 4 | Next
Cowpea - Cowpea SNP Version 4 - 9
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
1_0213 SNP 0.00 No other positions
1_1202 SNP 0.00 No other positions
1_1167 SNP 0.20 No other positions
1_1016 SNP 0.35 No other positions
1_0088 SNP 1.07 No other positions
1_0668 SNP 1.07 No other positions
1_0720 SNP 1.07 No other positions
1_0712 SNP 3.56 No other positions
1_1347 SNP 3.76 No other positions
1_1517 SNP 4.12 No other positions
1_0487 SNP 4.83 No other positions
1_0949 SNP 4.83 No other positions
1_0965 SNP 5.17 No other positions
1_1208 SNP 5.48 No other positions
1_0246 SNP 5.71 No other positions
1_0867 SNP 5.71 No other positions
1_0795 SNP 6.22 No other positions
1_0857 SNP 6.36 No other positions
1_0377 SNP 6.70 No other positions
1_0389 SNP 6.70 No other positions
1_0999 SNP 6.70 No other positions
1_1236 SNP 8.27 No other positions
1_0728 SNP 8.30 No other positions
1_0097 SNP 8.60 No other positions
1_0651 SNP 9.12 No other positions