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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cowpea-QTL_SNP
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 4
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Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
QTL
SNP
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cowpea - QTL_SNP [ View Map Set Info ]
Map Name: 4
Map Start: 0.00 cM
Map Stop: 70.25 cM
Features by Type:
5 QTL
13 SNP
18 Total

Map Features

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Items 1 to 18 of 18.
Cowpea - QTL_SNP - 4
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
100SDWTQTLI QTL 59.46 - 70.25 No other positions
100SDWTQTLII QTL 59.46 - 70.25 No other positions
PODWTQTLI QTL 59.46 - 70.25 No other positions
PODWTQTLII QTL 59.46 - 70.25 No other positions
MAT50QTLI QTL 59.46 - 70.25 No other positions
1_0052 SNP 0.00 No other positions
1_0054 SNP 0.00 No other positions
1_0397 SNP 1.27 No other positions
1_1360 SNP 11.36 No other positions
1_0504 SNP 11.91 No other positions
1_1138 SNP 16.43 No other positions
1_0082 SNP 27.79 No other positions
1_1445 SNP 29.24 No other positions
1_0535 SNP 36.03 No other positions
1_0692 SNP 38.97 No other positions
1_0128 SNP 46.59 No other positions
1_0699 SNP 59.46 No other positions
1_0304 SNP 70.25 No other positions