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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Chickpea-Chickpea_QTL_SNP
(Reference Set)
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
QTL
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
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Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
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Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Chickpea - Chickpea_QTL_SNP [ View Map Set Info ]
Map Name: 3
Map Start: 0.00 cM
Map Stop: 15.73 cM
Features by Type:
1 QTL
3 SSR
4 Total

Map Features

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Items 1 to 4 of 4.
Chickpea - Chickpea_QTL_SNP - 3
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
CAM1349 SSR 0.00 No other positions
CaM0924 SSR 6.02 Chickpea - Varshney_352 loci - LG04 CaM0924 SSR 86.38 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG04 CaM0924 SSR 10.55 (cM) Automated name-based View Maps
ICCM0127 SSR 15.73 Chickpea - Nayak_521 loci - LG 4 ICCM0127 SSR 211.80 (cM) Automated name-based View Maps
Chickpea - 1147 Transcript map(Seq-clone) - LG04 ICCM0127 SSR 52.57 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG04 ICCM0127 49.77 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 4 ICCM0127 SSR 58.84 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG04 ICCM0127 SSR 41.60 (cM) Automated name-based View Maps
DaysFFlower_PAT_RF_JG130_III QTL 6.02 - 15.73 No other positions