CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Chickpea-Chickpea_QTL_SNP
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 4
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
QTL
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Chickpea - Chickpea_QTL_SNP [ View Map Set Info ]
Map Name: 4
Map Start: 0.00 cM
Map Stop: 31.36 cM
Features by Type:
2 QTL
10 SSR
12 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 12 of 12.
Chickpea - Chickpea_QTL_SNP - 4
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TR1 SSR 0.00 Chickpea - Millan_555 loci - LG 6 TR1 RAPD 17.00 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 6 TR1 SSR 111.00 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG06 TR1 SSR 55.86 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 6 TR1 SSR 90.22 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 6 TR1 SSR 146.90 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 4 TR1 SSR 66.60 (cM) Automated name-based View Maps
TR44 SSR 9.34 Chickpea - Thudi_1291 loci - LG 6 TR44 SSR 94.46 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 6 TR44 SSR 103.50 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 6 TR44 Winter_published 49.70 (cM) Automated name-based View Maps
Chickpea - Vadez et al. Salt tolerance - LG3 TR44 SSR 23.10 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 1 TR44 SSR 110.50 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG06 TR44 SSR 58.53 (cM) Automated name-based View Maps
TA120 SSR 10.91 Chickpea - Varshney_241 loci - LG06 TA120 SSR 20.96 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG06 TA120 SSR 21.24 (cM) Automated name-based View Maps
Chickpea - Millan_555 loci - LG 6 TA120 unknown marker 27.00 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG06 TA120 SSR 23.38 (cM) Automated name-based View Maps
TA80 SSR 14.33 Chickpea - Winter_354 loci - LG 6 TA80 SSR 160.10 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG06 TA80 SSR 52.32 (cM) Automated name-based View Maps
Chickpea - Vadez et al. Salt tolerance - LG3 TA80 SSR 18.50 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG06 TA80 SSR 42.40 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 6 TA80 Winter_published 127.40 (cM) Automated name-based View Maps
CaM0317 SSR 15.52 Chickpea - Varshney_168 loci - LG06 CaM0317 SSR 24.12 (cM) Automated name-based View Maps
Chickpea - Pushpavalli_56_loci - CaLG06 CaM0317 SSR 0.30 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG06 CaM0317 SSR 42.33 (cM) Automated name-based View Maps
CaM1101 SSR 15.99 Chickpea - 1147 Transcript map(Seq-clone) - LG06 CaM1101 SSR 81.60 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 6 CaM1101 BES-SSR 92.63 (cM) Automated name-based View Maps
Chickpea - Pushpavalli_56_loci - CaLG06 CaM1101 SSR 0.30 (cM) Automated name-based View Maps
H5A04 SSR 16.43 Chickpea - Radhika_230 loci - LG 4 H5A04 SSR 36.90 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 6 H5A04 SSR 79.30 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG06 H5A04 SSR 32.25 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG06 H5A04 SSR 33.24 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG06 H5A04 SSR 30.58 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG06 H5A04 SSR 12.29 (cM) Automated name-based View Maps
TS105 SSR 19.52 Chickpea - Varshney_352 loci - LG06 TS105 SSR 23.90 (cM) Automated name-based View Maps
CAM0753 SSR 21.32 Chickpea - Varshney_352 loci - LG06 CaM0753 SSR 31.10 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG06 CaM0753 SSR 13.69 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG06 CaM0753 BES-SSR 44.68 (cM) Automated name-based View Maps
Chickpea - 1147 Transcript map(Seq-clone) - LG06 CaM0753 SSR 69.44 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 6 CaM0753 BES-SSR 78.58 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG06 CaM0753 SSR 30.79 (cM) Automated name-based View Maps
CaM0421 SSR 31.36 Chickpea - Varshney_241 loci - LG06 CaM0421 SSR 28.52 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 6 CaM0421 BES-SSR 79.04 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG06 CaM0421 SSR 14.75 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG06 CaM0421 BES-SSR 42.72 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG06 CaM0421 SSR 27.91 (cM) Automated name-based View Maps
Chickpea - 1147 Transcript map(Seq-clone) - LG06 CaM0421 SSR 68.39 (cM) Automated name-based View Maps
DaysFFlower_PAT_RF_JG130_I QTL 19.52 - 31.36 No other positions
HI_PAT_RF_JG130_II QTL 16.43 - 31.36 No other positions