CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Chickpea-Varshney_352 loci
(Reference Set) 		Chickpea-Pushpavalli_56_loci
Min.
Correspondences
Align Vertically
Stack
Maps LG03 CaLG07
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Conserved Intron Spanning Region
DArT
EST-SSR
SNP
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Chickpea - Varshney_352 loci_Consensus map [ View Map Set Info ]
Map Name: LG03
Map Start: 0.00 cM
Map Stop: 70.77 cM
Features by Type:
1 Conserved Intron Spanning Region
2 DArT
2 EST-SSR
59 SSR
64 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 64.       of 3 | Next
Chickpea - Varshney_352 loci_Consensus map - LG03
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
CaM0499 SSR 0.00 Chickpea - Varshney_168 loci - LG03 CaM0499 SSR 69.44 (cM) Automated name-based View Maps
CaM1117 SSR 2.09 Chickpea - Varshney_168 loci - LG03 CaM1117 SSR 65.66 (cM) Automated name-based View Maps
cpPb-677529 DArT 9.95 Chickpea - Varshney_168 loci - LG03 cpPb-677529 DArT 57.81 (cM) Automated name-based View Maps
CaM1988 SSR 18.65 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG03 CaM1988 SSR 67.76 (cM) Automated name-based View Maps
TR2 SSR 20.34 Chickpea - Vadez et al. Salt tolerance - LG4 TR2 unknown marker 3.50 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG03 TR2 SSR 0.00 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG03 TR2 SSR 37.57 (cM) Automated name-based View Maps
Chickpea - Chickpea_QTL_SNP - 6 TR2 SSR 0.00 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 3 TR2 Winter_published 60.30 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 3 TR2 SSR 96.20 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG03 TR2 SSR 54.19 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 3 TR2 SSR 37.96 (cM) Automated name-based View Maps
NCPGR10 SSR 21.22 Chickpea - Varshney_241 loci - LG03 NCPGR10 SSR 1.31 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG03 NCPGR10 SSR 42.69 (cM) Automated name-based View Maps
H3C06 SSR 23.08 Chickpea - Varshney_241 loci - LG03 H3C06 SSR 2.32 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG03 H3C06 SSR 64.01 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 1 H3C06 SSR 0.00 (cM) Automated name-based View Maps
CaM2031 SSR 24.72 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG03 CaM2031 SSR 60.64 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG03 CaM2031 SSR 5.43 (cM) Automated name-based View Maps
Chickpea - Pushpavalli_56_loci - CaLG07 CaM2031 SSR 0.90 (cM) Automated name-based View Maps
NCPGR268 SSR 25.73 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG03 NCPGR268 SSR 59.56 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG03 NCPGR268 SSR 6.35 (cM) Automated name-based View Maps
NCPGR255 SSR 27.90 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG03 NCPGR255 SSR 57.83 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG03 NCPGR255 SSR 8.28 (cM) Automated name-based View Maps
CaM1753 SSR 28.59 Chickpea - Varshney_168 loci - LG03 CaM1753 SSR 39.16 (cM) Automated name-based View Maps
NCPGR278 SSR 28.77 Chickpea - Varshney_241 loci - LG03 NCPGR278 SSR 9.09 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG03 NCPGR278 SSR 56.43 (cM) Automated name-based View Maps
NCPGR273 SSR 29.15 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG03 NCPGR273 SSR 56.03 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG03 NCPGR273 SSR 9.53 (cM) Automated name-based View Maps
CaM1851 SSR 29.74 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG03 CaM1851 SSR 56.81 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG03 CaM1851 SSR 10.00 (cM) Automated name-based View Maps
CaM0204 SSR 30.12 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG03 CaM0204 SSR 52.43 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG03 CaM0204 SSR 10.75 (cM) Automated name-based View Maps
CaM1765 SSR 30.60 Chickpea - Varshney_241 loci - LG03 CaM1765 SSR 11.16 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG03 CaM1765 SSR 55.58 (cM) Automated name-based View Maps
CaM2181 SSR 31.22 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG03 CaM2181 SSR 53.57 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG03 CaM2181 SSR 11.66 (cM) Automated name-based View Maps
CaM1835 SSR 31.34 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG03 CaM1835 SSR 53.47 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG03 CaM1835 SSR 11.83 (cM) Automated name-based View Maps
CaM0713 SSR 31.58 Chickpea - Varshney_241 loci - LG03 CaM0713 SSR 12.04 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG03 CaM0713 SSR 53.97 (cM) Automated name-based View Maps
CaM1843 SSR 31.64 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG03 CaM1843 SSR 54.08 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG03 CaM1843 SSR 12.04 (cM) Automated name-based View Maps
CaM0157 SSR 31.84 Chickpea - Varshney_241 loci - LG03 CaM0157 SSR 12.42 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG03 CaM0157 SSR 54.61 (cM) Automated name-based View Maps
CaM0326 SSR 31.92 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG03 CaM0326 SSR 54.13 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG03 CaM0326 SSR 12.44 (cM) Automated name-based View Maps
CaM0003 SSR 32.06 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG03 CaM0003 SSR 54.20 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG03 CaM0003 SSR 12.48 (cM) Automated name-based View Maps
TA34 SSR 32.27 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG03 TA34 SSR 54.30 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 3 TA34 SSR 96.20 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 3 TA34 Winter_published 60.40 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG03 TA34 SSR 12.71 (cM) Automated name-based View Maps
CaM0120 SSR 32.51 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG03 CaM0120 SSR 54.42 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG03 CaM0120 SSR 12.93 (cM) Automated name-based View Maps