CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Chickpea-Varshney_352 loci
(Reference Set)
Chickpea-Hiremath_1328 loci
Min.
Correspondences
Align Vertically
Stack
Maps LG04 LG04
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
BES-SSR
CAPS
DArT
EST-SSR
SNP
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Chickpea - Varshney_352 loci_Consensus map [ View Map Set Info ]
Map Name: LG04
Map Start: 0.00 cM
Map Stop: 111.98 cM
Features by Type:
1 CAPS
5 DArT
45 SSR
51 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 51.       of 3 | Next
Chickpea - Varshney_352 loci_Consensus map - LG04
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
NCPGR91 SSR 0.00 Chickpea - Varshney_241 loci - LG04 NCPGR91 SSR 111.90 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 NCPGR91 SSR 102.26 (cM) Automated name-based View Maps
Tp684964 CAPS 12.61 Chickpea - Varshney_241 loci - LG04 Tp684964 CAPS 99.17 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 Tp684964 CAPS 86.33 (cM) Automated name-based View Maps
cpPb-680552 DArT 27.08 Chickpea - Varshney_241 loci - LG04 cpPb-680552 DArT 85.33 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 cpPb-680552 DArT 79.63 (cM) Automated name-based View Maps
STMS11 SSR 29.99 Chickpea - Nayak_521 loci - LG 4 STMS11 SSR 118.00 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 4 STMS11 SSR 62.70 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG04 STMS11 SSR 80.30 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 STMS11 SSR 78.85 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG04 STMS11 SSR 82.25 (cM) Automated name-based View Maps
Chickpea - Millan_555 loci - LG 4 STMS11 RAPD 27.00 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 4 STMS11 Winter 27.04 (cM) Automated name-based View Maps
GA24 SSR 32.81 Chickpea - Winter_354 loci - LG 4 GA24 SSR 62.70 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 4 GA24 Winter 27.44 (cM) Automated name-based View Maps
Chickpea - Millan_555 loci - LG 4 GA24 RAPD 28.00 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 4 GA24 Winter_published 118.00 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG04 GA24 SSR 79.50 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG04 GA24 Winter 11.30 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 2 GA24 SSR 110.80 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG04 GA24 SSR 80.20 (cM) Automated name-based View Maps
TR11 SSR 35.33 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 TR11 SSR 105.58 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG04 TR11 SSR 75.94 (cM) Automated name-based View Maps
NCPGR21 SSR 38.98 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 NCPGR21 SSR 78.34 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG04 NCPGR21 SSR 73.10 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 2 NCPGR21 SSR 105.10 (cM) Automated name-based View Maps
TAA170 SSR 46.67 Chickpea - Radhika_230 loci - LG 2 TAA170 SSR 91.10 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 4 TAA170 Winter 54.56 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG04 TAA170 SSR 43.95 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG04 TAA170 SSR 68.10 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 TAA170 SSR 77.37 (cM) Automated name-based View Maps
NCPGR127 SSR 48.59 Chickpea - Varshney_241 loci - LG04 NCPGR127 SSR 62.56 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 NCPGR127 SSR 69.80 (cM) Automated name-based View Maps
NCPGR142 SSR 55.48 Chickpea - Varshney_168 loci - LG04 NCPGR142 SSR 41.27 (cM) Automated name-based View Maps
ICCM0249 SSR 57.30 Chickpea - Varshney_241 loci - LG04 ICCM0249 SSR 54.53 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG04 ICCM0249 SSR 36.00 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG04 ICCM0249 50.24 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 4 ICCM0249 SSR 155.10 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 ICCM0249 SSR 64.46 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG04 ICCM0249 SSR 34.79 (cM) Automated name-based View Maps
Chickpea - 1147 Transcript map(Seq-clone) - LG04 ICCM0249 SSR 44.32 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 4 ICCM0249 SSR 53.57 (cM) Automated name-based View Maps
TR8 SSR 58.52 Chickpea - Varshney_241 loci - LG04 TR8 SSR 52.79 (cM) Automated name-based View Maps
Chickpea - Millan_229 loci - LG04b TR8 unknown marker 38.00 (cM) Automated name-based View Maps
Chickpea - Vadez et al. Salt tolerance - LG6 TR8 SSR 10.00 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 TR8 SSR 60.16 (cM) Automated name-based View Maps
CaM1214 SSR 58.79 Chickpea - Varshney_168 loci - LG04 CaM1214 SSR 38.22 (cM) Automated name-based View Maps
ICCeM0058 SSR 72.28 Chickpea - Varshney_241 loci - LG04 ICCeM0058 EST-SSR 49.49 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG04 ICCeM0058 EST-SSR 24.95 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 ICCeM0058 EST-SSR 37.27 (cM) Automated name-based View Maps
CaM1328 SSR 65.36 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 CaM1328 SSR 50.80 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG04 CaM1328 SSR 46.79 (cM) Automated name-based View Maps
NCPGR236 SSR 65.84 Chickpea - Varshney_241 loci - LG04 NCPGR236 SSR 42.58 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 NCPGR236 SSR 54.44 (cM) Automated name-based View Maps
NCPGR30 SSR 66.22 Chickpea - Varshney_241 loci - LG04 NCPGR30 SSR 42.14 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 NCPGR30 SSR 55.55 (cM) Automated name-based View Maps
TA132 SSR 66.87 Chickpea - Varshney_241 loci - LG04 TA132 SSR 44.88 (cM) Automated name-based View Maps
Chickpea - Chickpea_QTL_SNP - 7 Ta132 SSR 0.00 (cM) Automated name-based View Maps
Chickpea - Vadez et al. Salt tolerance - LG6 TA132 SSR 50.80 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 TA132 SSR 51.13 (cM) Automated name-based View Maps
Chickpea - Millan_229 loci - LG04b TA132 RAPD 43.00 (cM) Automated name-based View Maps
NCPGR31 SSR 67.51 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 NCPGR31 SSR 53.18 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG04 NCPGR31 SSR 41.39 (cM) Automated name-based View Maps
CaM0923 SSR 68.73 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 CaM0923 SSR 53.51 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG04 CaM0923 SSR 40.49 (cM) Automated name-based View Maps
CaM2093 SSR 69.28 Chickpea - Varshney_241 loci - LG04 CaM2093 SSR 40.06 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 CaM2093 SSR 50.39 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG04 CaM2093 SSR 29.65 (cM) Automated name-based View Maps
CaM1077 SSR 69.49 Chickpea - Pushpavalli_56_loci - CaLG04d CaM1077 SSR 48.00 (cM) Automated name-based View Maps
CaM0507 SSR 70.07 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 CaM0507 SSR 50.59 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG04 CaM0507 SSR 39.67 (cM) Automated name-based View Maps
Chickpea - 1147 Transcript map(Seq-clone) - LG04 CaM0507 SSR 54.13 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 4 CaM0507 BES-SSR 60.91 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG04 CaM0507 BES-SSR 48.82 (cM) Automated name-based View Maps
NCPGR27 SSR 70.35 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 NCPGR27 SSR 51.73 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG04 NCPGR27 SSR 39.09 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 2 NCPGR27 SSR 90.50 (cM) Automated name-based View Maps
NCPGR7 SSR 70.51 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 NCPGR7 SSR 52.22 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG04 NCPGR7 SSR 38.93 (cM) Automated name-based View Maps