CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Chickpea-Varshney_352 loci
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG06
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Conserved Intron Spanning Region
DArT
EST-SSR
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Chickpea - Varshney_352 loci_Consensus map [ View Map Set Info ]
Map Name: LG06
Map Start: 0.00 cM
Map Stop: 119.89 cM
Features by Type:
1 Conserved Intron Spanning Region
1 DArT
2 EST-SSR
54 SSR
58 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 58.       of 3 | Next
Chickpea - Varshney_352 loci_Consensus map - LG06
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
CISR42 Conserved Intron Spanning Region 0.00 Chickpea - Varshney_168 loci - LG06 CISR42 SSR 65.29 (cM) Automated name-based View Maps
TA14 SSR 1.93 Chickpea - Millan_555 loci - LG 6 TA14 RAPD 0.00 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG06 TA14 SSR 65.29 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG06 TA14 SSR 0.00 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 6 TA14 Winter_published 14.60 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG06 TA14 SSR 63.75 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG06 TA14 SSR 45.22 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 6 TA14 SSR 92.30 (cM) Automated name-based View Maps
STMS15 SSR 3.51 Chickpea - Millan_555 loci - LG 6 STMS15 RAPD 4.00 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 6 STMS15 SSR 13.20 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 6 STMS15 SSR 88.70 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG06 STMS15 SSR 62.67 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 4 STMS15 SSR 97.30 (cM) Automated name-based View Maps
CaM1855 SSR 7.50 Chickpea - Varshney_168 loci - LG06 CaM1855 SSR 50.94 (cM) Automated name-based View Maps
TR35 SSR 9.81 Chickpea - Varshney_168 loci - LG06 TR35 SSR 55.75 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 2 TR35 SSR 62.70 (cM) Automated name-based View Maps
Chickpea - Vadez et al. Salt tolerance - LG3 TR35 SSR 2.90 (cM) Automated name-based View Maps
cpPb-489187 DArT 13.01 Chickpea - Varshney_241 loci - LG06 cpPb-489187 DArT 12.48 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG06 cpPb-489187 DArT 33.04 (cM) Automated name-based View Maps
NCPGR206 SSR 14.53 Chickpea - Varshney_168 loci - LG06 NCPGR206 SSR 49.41 (cM) Automated name-based View Maps
TR40 SSR 17.80 Chickpea - Radhika_230 loci - LG 4 TR40 SSR 53.10 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG06 TR40 SSR 47.57 (cM) Automated name-based View Maps
Chickpea - Vadez et al. Salt tolerance - LG3 TR40 SSR 14.20 (cM) Automated name-based View Maps
CaM1943 SSR 19.52 Chickpea - Varshney_168 loci - LG06 CaM1943 SSR 43.17 (cM) Automated name-based View Maps
CaM0500 SSR 20.31 Chickpea - Varshney_241 loci - LG06 CaM0500 SSR 20.24 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG06 CaM0500 SSR 5.16 (cM) Automated name-based View Maps
TA153 SSR 20.85 No other positions
TA120 SSR 21.24 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG06 TA120 SSR 23.38 (cM) Automated name-based View Maps
Chickpea - Millan_555 loci - LG 6 TA120 unknown marker 27.00 (cM) Automated name-based View Maps
Chickpea - Chickpea_QTL_SNP - 4 TA120 SSR 10.91 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG06 TA120 SSR 20.96 (cM) Automated name-based View Maps
CaM1402 SSR 22.03 Chickpea - Varshney_168 loci - LG06 CaM1402 SSR 41.22 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG06 CaM1402 BES-SSR 44.39 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 6 CaM1402 BES-SSR 78.43 (cM) Automated name-based View Maps
Chickpea - 1147 Transcript map(Seq-clone) - LG06 CaM1402 SSR 69.60 (cM) Automated name-based View Maps
CaM0389 SSR 22.93 Chickpea - Varshney_241 loci - LG06 CaM0389 SSR 23.79 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG06 CaM0389 SSR 21.23 (cM) Automated name-based View Maps
TS105 SSR 23.90 Chickpea - Chickpea_QTL_SNP - 4 TS105 SSR 19.52 (cM) Automated name-based View Maps
CaM1258 SSR 24.37 Chickpea - Varshney_168 loci - LG06 CaM1258 SSR 38.82 (cM) Automated name-based View Maps
TR7 SSR 26.19 Chickpea - Varshney_168 loci - LG06 TR7 SSR 51.74 (cM) Automated name-based View Maps
Chickpea - Millan_555 loci - LG 6 TR7 unknown marker 28.00 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG06 TR7 SSR 17.10 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 6 TR7 SSR 160.10 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG06 TR7 SSR 27.18 (cM) Automated name-based View Maps
ICCeM051 EST-SSR 27.06 No other positions
CaM0421 SSR 27.91 Chickpea - Varshney_241 loci - LG06 CaM0421 SSR 28.52 (cM) Automated name-based View Maps
Chickpea - Chickpea_QTL_SNP - 4 CaM0421 SSR 31.36 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 6 CaM0421 BES-SSR 79.04 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG06 CaM0421 SSR 14.75 (cM) Automated name-based View Maps
Chickpea - 1147 Transcript map(Seq-clone) - LG06 CaM0421 SSR 68.39 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG06 CaM0421 BES-SSR 42.72 (cM) Automated name-based View Maps
CaM1790 SSR 28.49 Chickpea - Varshney_241 loci - LG06 CaM1790 SSR 27.80 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG06 CaM1790 SSR 16.18 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG06 CaM1790 SSR 35.63 (cM) Automated name-based View Maps
H3A052 SSR 29.18 Chickpea - Varshney_168 loci - LG06 H3A052 SSR 34.90 (cM) Automated name-based View Maps
CaM0636 SSR 29.20 Chickpea - Varshney_241 loci - LG06 CaM0636 SSR 29.03 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG06 CaM0636 SSR 15.31 (cM) Automated name-based View Maps
ICCM0242a SSR 29.29 Chickpea - Hiremath_1328 loci - LG06 ICCM0242a 43.73 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG06 ICCM0242a SSR 72.20 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 6 ICCM0242a SSR 76.74 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG06 ICCM0242a SSR 34.79 (cM) Automated name-based View Maps
Chickpea - 1147 Transcript map(Seq-clone) - LG06 ICCM0242a SSR 69.55 (cM) Automated name-based View Maps
CaM0677 SSR 30.11 Chickpea - Varshney_168 loci - LG06 CaM0677 SSR 33.87 (cM) Automated name-based View Maps
Chickpea - 1147 Transcript map(Seq-clone) - LG06 CaM0677 SSR 69.42 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 6 CaM0677 BES-SSR 78.64 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG06 CaM0677 BES-SSR 44.69 (cM) Automated name-based View Maps
CaM1826 SSR 30.54 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG06 CaM1826 SSR 14.21 (cM) Automated name-based View Maps
Chickpea - Pushpavalli_56_loci - CaLG06 CaM1826 SSR 0.30 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG06 CaM1826 SSR 30.21 (cM) Automated name-based View Maps