CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Chickpea-Varshney_241 loci
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG04
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
CAPS
DArT
EST-SSR
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Chickpea - Varshney_241 loci_ICC 4958 x ICC 1882 [ View Map Set Info ]
Map Name: LG04
Map Start: 0.00 cM
Map Stop: 111.90 cM
Features by Type:
1 CAPS
7 DArT
1 EST-SSR
36 SSR
45 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 45.       of 2 | Next
Chickpea - Varshney_241 loci_ICC 4958 x ICC 1882 - LG04
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
cpPb-678284 DArT 0.00 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 cpPb-678284 DArT 12.89 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG04 cpPb-678284 DArT 111.98 (cM) Automated name-based View Maps
cpPb-490776 DArT 0.02 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 cpPb-490776 DArT 12.87 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG04 cpPb-490776 DArT 111.98 (cM) Automated name-based View Maps
CaM0615 SSR 6.68 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 CaM0615 SSR 82.65 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG04 CaM0615 SSR 101.23 (cM) Automated name-based View Maps
CaM0845 SSR 7.86 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 CaM0845 SSR 83.81 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG04 CaM0845 SSR 102.54 (cM) Automated name-based View Maps
CaM0856 SSR 8.11 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 CaM0856 SSR 84.02 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG04 CaM0856 SSR 102.44 (cM) Automated name-based View Maps
CaM0821 SSR 8.84 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 CaM0821 SSR 23.67 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG04 CaM0821 SSR 102.03 (cM) Automated name-based View Maps
GA137 SSR 11.73 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 GA137 SSR 12.91 (cM) Automated name-based View Maps
Chickpea - Vadez et al. Salt tolerance - LG6 GA137 SSR 5.60 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG04 GA137 SSR 105.14 (cM) Automated name-based View Maps
ICCM0257 SSR 19.60 Chickpea - 1147 Transcript map(Seq-clone) - LG04 ICCM0257 SSR 72.54 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 4 ICCM0257 SSR 90.49 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG04 ICCM0257 26.96 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG04 ICCM0257 SSR 90.48 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 ICCM0257 SSR 25.12 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG04 ICCM0257 SSR 65.10 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 4 ICCM0257 SSR 337.30 (cM) Automated name-based View Maps
ICCM0065 SSR 24.82 Chickpea - Varshney_352 loci - LG04 ICCM0065 SSR 85.27 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 4 ICCM0065 SSR 169.10 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 ICCM0065 SSR 66.30 (cM) Automated name-based View Maps
CaM1684 SSR 34.20 Chickpea - Varshney_352 loci - LG04 CaM1684 SSR 75.65 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 CaM1684 SSR 53.98 (cM) Automated name-based View Maps
H1A19 SSR 35.73 Chickpea - Varshney_168 loci - LG04 H1A19 SSR 22.38 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG04 H1A19 SSR 74.40 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 H1A19 SSR 56.50 (cM) Automated name-based View Maps
NCPGR231 SSR 35.92 Chickpea - Varshney_352 loci - LG04 NCPGR231 SSR 73.39 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 NCPGR231 SSR 54.81 (cM) Automated name-based View Maps
H4G11 SSR 36.06 Chickpea - Varshney_352 loci - LG04 H4G11 SSR 73.99 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 2 H4G11 SSR 69.90 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG04 H4G11 SSR 23.19 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 H4G11 SSR 55.97 (cM) Automated name-based View Maps
TR20 SSR 37.03 Chickpea - Millan_229 loci - LG04b TR20 RAPD 48.00 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG04 TR20 SSR 39.85 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 4 TR20 Winter_published 243.60 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 TR20 SSR 54.58 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 4 TR20 SSR 76.86 (cM) Automated name-based View Maps
Chickpea - Chickpea_QTL_SNP - 7 TR20 SSR 2.61 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 4 TR20 SSR 103.50 (cM) Automated name-based View Maps
H1B17 SSR 37.99 Chickpea - Thudi_1291 loci - LG 4 H1B17 SSR 62.11 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG04 H1B17 SSR 43.90 (cM) Automated name-based View Maps
Chickpea - Chickpea_QTL_SNP - 7 H1B17 SSR 6.08 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG04 H1B17 SSR 23.74 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 H1B17 SSR 52.59 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 4 H1B17 SSR 212.90 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG04 H1B17 48.41 (cM) Automated name-based View Maps
ICCM0068 SSR 38.45 Chickpea - 1147 Transcript map(Seq-clone) - LG04 ICCM0068 SSR 52.02 (cM) Automated name-based View Maps
Chickpea - Chickpea_QTL_SNP - 7 ICCM0068 SSR 9.54 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 4 ICCM0068 SSR 61.20 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG04 ICCM0068 51.64 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 ICCM0068 SSR 52.01 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG04 ICCM0068 SSR 23.76 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 4 ICCM0068 SSR 282.20 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG04 ICCM0068 SSR 71.75 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG04 ICCM0068 SSR 43.00 (cM) Automated name-based View Maps
ICCM0250 SSR 38.58 Chickpea - Varshney_352 loci - LG04 ICCM0250 SSR 70.89 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 ICCM0250 SSR 52.42 (cM) Automated name-based View Maps
ICCM0069 SSR 38.83 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 ICCM0069 SSR 51.48 (cM) Automated name-based View Maps
Chickpea - Pushpavalli_56_loci - CaLG04d ICCM0069 SSR 128.30 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG04 ICCM0069 SSR 70.72 (cM) Automated name-based View Maps
NCPGR7 SSR 38.93 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 NCPGR7 SSR 52.22 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG04 NCPGR7 SSR 70.51 (cM) Automated name-based View Maps
NCPGR27 SSR 39.09 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 NCPGR27 SSR 51.73 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG04 NCPGR27 SSR 70.35 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 2 NCPGR27 SSR 90.50 (cM) Automated name-based View Maps
CaM0507 SSR 39.67 Chickpea - Varshney_352 loci - LG04 CaM0507 SSR 70.07 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG04 CaM0507 BES-SSR 48.82 (cM) Automated name-based View Maps
Chickpea - 1147 Transcript map(Seq-clone) - LG04 CaM0507 SSR 54.13 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 4 CaM0507 BES-SSR 60.91 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 CaM0507 SSR 50.59 (cM) Automated name-based View Maps
CaM2093 SSR 40.06 Chickpea - Varshney_168 loci - LG04 CaM2093 SSR 29.65 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG04 CaM2093 SSR 69.28 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 CaM2093 SSR 50.39 (cM) Automated name-based View Maps
CaM0923 SSR 40.49 Chickpea - Varshney_352 loci - LG04 CaM0923 SSR 68.73 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 CaM0923 SSR 53.51 (cM) Automated name-based View Maps
NCPGR31 SSR 41.39 Chickpea - Varshney_352 loci - LG04 NCPGR31 SSR 67.51 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 NCPGR31 SSR 53.18 (cM) Automated name-based View Maps
NCPGR30 SSR 42.14 Chickpea - Varshney_352 loci - LG04 NCPGR30 SSR 66.22 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 NCPGR30 SSR 55.55 (cM) Automated name-based View Maps