CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Chickpea-Varshney_241 loci
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG07
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
Conserved Intron Spanning Region
DArT
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Chickpea - Varshney_241 loci_ICC 4958 x ICC 1882 [ View Map Set Info ]
Map Name: LG07
Map Start: 0.00 cM
Map Stop: 96.11 cM
Features by Type:
1 Conserved Intron Spanning Region
1 DArT
25 SSR
27 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 27.       of 2 | Next
Chickpea - Varshney_241 loci_ICC 4958 x ICC 1882 - LG07
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
CaM2131 SSR 0.00 Chickpea - Varshney_168 loci - LG07 CaM2131 SSR 11.75 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG07 CaM2131 SSR 0.00 (cM) Automated name-based View Maps
NCPGR19 SSR 12.47 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG07 NCPGR19 SSR 6.62 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG07 NCPGR19 SSR 83.64 (cM) Automated name-based View Maps
CaM2041 SSR 18.90 Chickpea - Varshney_352 loci - LG07 CaM2041 SSR 77.18 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG07 CaM2041 SSR 62.86 (cM) Automated name-based View Maps
CaM1417 SSR 19.49 Chickpea - Varshney_352 loci - LG07 CaM1417 SSR 76.68 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG07 CaM1417 SSR 54.38 (cM) Automated name-based View Maps
ICCM199c SSR 25.10 No other positions
cpPb-490874 DArT 26.80 Chickpea - Thudi_1291 loci - LG 7 cpPb-490874 DArT 36.51 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG07 cpPb-490874 DArT 69.31 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG07 cpPb-490874 DArT 28.95 (cM) Automated name-based View Maps
CISR117 Conserved Intron Spanning Region 28.59 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG07 CISR117 Conserved Intron Spanning Region 29.89 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG07 CISR117 Conserved Intron Spanning Region 67.50 (cM) Automated name-based View Maps
STMS12 SSR 30.96 Chickpea - Varshney_352 loci - LG07 STMS12 SSR 65.15 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 1 STMS12 Winter_published 244.60 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG07 STMS12 SSR 34.57 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 11 STMS12 SSR 0.00 (cM) Automated name-based View Maps
STMS25 SSR 32.15 Chickpea - Varshney_352 loci - LG07 STMS25 SSR 64.38 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 5 STMS25 Winter_published 305.90 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG07 STMS25 SSR 19.01 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 15 STMS25 SSR 0.00 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG07 STMS25 SSR 42.78 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 5 STMS25 SSR 36.10 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG07 STMS25 SSR 62.49 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 7 STMS25 Winter 5.90 (cM) Automated name-based View Maps
CaM1469 SSR 35.47 Chickpea - 1147 Transcript map(Seq-clone) - LG07 CaM1469 SSR 92.13 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG07 CaM1469 SSR 60.62 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG07 CaM1469 SSR 40.14 (cM) Automated name-based View Maps
Chickpea - Pushpavalli_56_loci - CaLG07 CaM1469 SSR 77.30 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 7 CaM1469 BES-SSR 7.13 (cM) Automated name-based View Maps
CaM1942 SSR 36.39 Chickpea - Pushpavalli_56_loci - CaLG07 CaM1942 SSR 39.90 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG07 CaM1942 SSR 59.69 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG07 CaM1942 SSR 39.28 (cM) Automated name-based View Maps
CaM0443 SSR 36.71 Chickpea - Thudi_1291 loci - LG 7 CaM0443 BES-SSR 38.00 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG07 CaM0443 SSR 13.20 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG07 CaM0443 SSR 59.32 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG07 CaM0443 SSR 38.98 (cM) Automated name-based View Maps
CaM2155 SSR 36.96 Chickpea - Chickpea_QTL_SNP - 9 CaM2155 SSR 8.76 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG07 CaM2155 SSR 38.79 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG07 CaM2155 SSR 59.13 (cM) Automated name-based View Maps
CaM0598 SSR 37.31 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG07 CaM0598 SSR 38.59 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG07 CaM0598 SSR 58.78 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 7 CaM0598 BES-SSR 47.99 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG07 CaM0598 BES-SSR 19.04 (cM) Automated name-based View Maps
Chickpea - 1147 Transcript map(Seq-clone) - LG07 CaM0598 SSR 56.88 (cM) Automated name-based View Maps
CaM0111 SSR 37.57 Chickpea - Varshney_168 loci - LG07 CaM0111 SSR 17.59 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG07 CaM0111 SSR 58.35 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG07 CaM0111 SSR 37.93 (cM) Automated name-based View Maps
Chickpea - Chickpea_QTL_SNP - 1 CaM0111 SSR 19.34 (cM) Automated name-based View Maps
NCPGR99 SSR 38.26 Chickpea - Varshney_352 loci - LG07 NCPGR99 SSR 57.84 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG07 NCPGR99 SSR 37.63 (cM) Automated name-based View Maps
H1O12 SSR 38.64 Chickpea - Nayak_521 loci - LG 7 H1O12 SSR 259.80 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG07 H1O12 SSR 57.46 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG07 H1O12 27.89 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG07 H1O12 SSR 38.40 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 7 H1O12 SSR 49.40 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG07 H1O12 SSR 22.00 (cM) Automated name-based View Maps
ICCM0160 SSR 39.00 Chickpea - Varshney_352 loci - LG07 ICCM0160 SSR 57.09 (cM) Automated name-based View Maps
TA180 SSR 40.28 Chickpea - Hiremath_1328 loci - LG07 TA180 SSR 44.85 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG07 TA180 SSR 55.80 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 5 TA180 SSR 165.00 (cM) Automated name-based View Maps
Chickpea - Vadez et al. Salt tolerance - LG5 TA180 SSR 15.10 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 5 TA180 SSR 26.30 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 7 TA180 Winter_published 329.00 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG07 TA180 SSR 37.00 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 7 TA180 Winter 66.68 (cM) Automated name-based View Maps
ICCM0197a SSR 43.72 Chickpea - Varshney_352 loci - LG07 ICCM0197a EST-SSR 52.37 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG03 ICCM0197a 44.96 (cM) Automated name-based View Maps
Chickpea - 1147 Transcript map(Seq-clone) - LG03 ICCM0197a SSR 22.03 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG03 ICCM0197a SSR 11.20 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 3 ICCM0197a SSR 28.85 (cM) Automated name-based View Maps
CaM1567 SSR 46.26 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG07 CaM1567 SSR 46.24 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG07 CaM1567 SSR 49.82 (cM) Automated name-based View Maps
NCPGR141 SSR 52.05 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG07 NCPGR141 SSR 53.27 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG07 NCPGR141 SSR 44.04 (cM) Automated name-based View Maps
NCPGR171 SSR 53.63 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG07 NCPGR171 SSR 52.67 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG07 NCPGR171 SSR 42.48 (cM) Automated name-based View Maps
TA76s SSR 59.40 Chickpea - Varshney_352 loci - LG07 TA76s SSR 36.71 (cM) Automated name-based View Maps
TA142 SSR 63.45 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG07 TA142 SSR 63.03 (cM) Automated name-based View Maps
Chickpea - Millan_555 loci - LG 3 TA142 unknown marker 57.00 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG07 TA142 SSR 32.65 (cM) Automated name-based View Maps