CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Chickpea-Varshney_241 loci
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG08
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Chickpea - Varshney_241 loci_ICC 4958 x ICC 1882 [ View Map Set Info ]
Map Name: LG08
Map Start: 0.00 cM
Map Stop: 51.28 cM
Features by Type:
21 SSR
21 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 21 of 21.
Chickpea - Varshney_241 loci_ICC 4958 x ICC 1882 - LG08
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
NCPGR164 SSR 0.00 Chickpea - Varshney_352 loci - LG08 NCPGR164 SSR 17.93 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG08 NCPGR164 SSR 57.23 (cM) Automated name-based View Maps
CaM2187 SSR 9.65 Chickpea - Varshney_352 loci - LG08 CaM2187 SSR 27.87 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG08 CaM2187 SSR 0.00 (cM) Automated name-based View Maps
CaM1918 SSR 22.86 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG08 CaM1918 SSR 37.67 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG08 CaM1918 SSR 40.86 (cM) Automated name-based View Maps
NCPGR170 SSR 28.86 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG08 NCPGR170 SSR 28.58 (cM) Automated name-based View Maps
NCPGR146 SSR 29.23 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG08 NCPGR146 SSR 28.14 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG08 NCPGR146 SSR 44.39 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG08 NCPGR146 SSR 44.82 (cM) Automated name-based View Maps
NCPGR118 SSR 29.73 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG08 NCPGR118 SSR 28.39 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG08 NCPGR118 SSR 46.74 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG08 NCPGR118 SSR 47.26 (cM) Automated name-based View Maps
NCPGR89 SSR 30.35 Chickpea - Varshney_352 loci - LG08 NCPGR89 SSR 48.98 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 6 NCPGR89 SSR 17.20 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG08 NCPGR89 SSR 27.58 (cM) Automated name-based View Maps
NCPGR209 SSR 34.82 Chickpea - Varshney_352 loci - LG08 NCPGR209 SSR 52.56 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG08 NCPGR209 SSR 20.79 (cM) Automated name-based View Maps
NCPGR264 SSR 35.27 Chickpea - Varshney_352 loci - LG08 NCPGR264 SSR 53.04 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG08 NCPGR264 SSR 20.60 (cM) Automated name-based View Maps
H3E052 SSR 35.40 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG08 H3E052 SSR 20.52 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG08 H3E052 SSR 53.17 (cM) Automated name-based View Maps
H5B04 SSR 35.56 Chickpea - Nayak_521 loci - LG 8 H5B04 SSR 108.20 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG08 H5B04 SSR 53.33 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG08 H5B04 SSR 53.00 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG08 H5B04 52.65 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 8 H5B04 SSR 55.23 (cM) Automated name-based View Maps
Chickpea - Chickpea_QTL_SNP - 8 H5B04 SSR 25.96 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG08 H5B04 SSR 20.49 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 3 H5B04 SSR 68.50 (cM) Automated name-based View Maps
CaM1399 SSR 35.87 Chickpea - Varshney_352 loci - LG08 CaM1399 SSR 53.70 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG08 CaM1399 SSR 20.37 (cM) Automated name-based View Maps
CaM1274 SSR 36.02 Chickpea - Varshney_352 loci - LG08 CaM1274 SSR 53.86 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG08 CaM1274 SSR 20.31 (cM) Automated name-based View Maps
H1H14 SSR 36.35 Chickpea - Varshney_352 loci - LG08 H1H14 SSR 54.58 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG08 H1H14 SSR 53.00 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG08 H1H14 SSR 21.38 (cM) Automated name-based View Maps
TA25 SSR 37.53 Chickpea - Varshney_168 loci - LG08 TA25 SSR 53.25 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG08 TA25 SSR 18.74 (cM) Automated name-based View Maps
Chickpea - Vadez et al. Salt tolerance - LG4 TA25 SSR 4.30 (cM) Automated name-based View Maps
Chickpea - Chickpea_QTL_SNP - 6 TA25 SSR 11.07 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG08 TA25 SSR 55.90 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 2 TA25 SSR 19.60 (cM) Automated name-based View Maps
TA127 SSR 38.80 Chickpea - Chickpea_QTL_SNP - 6 TA127 SSR 14.67 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG08 TA127 SSR 57.06 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG08 TA127 SSR 55.92 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG08 TA127 SSR 19.23 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 3 TA127 SSR 81.50 (cM) Automated name-based View Maps
Chickpea - Vadez et al. Salt tolerance - LG4 TA127 unknown marker 0.00 (cM) Automated name-based View Maps
TA3 SSR 39.23 Chickpea - Thudi_1291 loci - LG 8 TA3 Winter 63.85 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG08 TA3 SSR 64.25 (cM) Automated name-based View Maps
Chickpea - Vadez et al. Salt tolerance - LG4 TA3 SSR 4.30 (cM) Automated name-based View Maps
Chickpea - Chickpea_QTL_SNP - 8 TA3 SSR 22.18 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG08 TA3 SSR 57.11 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 8 TA3 SSR 127.90 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 8 TA3 Winter_published 98.50 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG08 TA3 SSR 18.37 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG08 TA3 Winter 66.80 (cM) Automated name-based View Maps
TR5 SSR 39.85 Chickpea - Varshney_352 loci - LG08 TR5 SSR 57.73 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG08 TR5 SSR 17.36 (cM) Automated name-based View Maps
Chickpea - Chickpea_QTL_SNP - 6 TR5 SSR 9.21 (cM) Automated name-based View Maps
TS57 SSR 41.46 Chickpea - Vadez et al. Salt tolerance - LG4 TS57 SSR 6.50 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG08 TS57 SSR 59.33 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG08 TS57 SSR 15.14 (cM) Automated name-based View Maps
H3C11 SSR 43.43 Chickpea - Hiremath_1328 loci - LG08 H3C11 21.44 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG08 H3C11 SSR 73.10 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG08 H3C11 SSR 12.79 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 8 H3C11 SSR 79.07 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG08 H3C11 SSR 61.32 (cM) Automated name-based View Maps
CaM0081 SSR 51.28 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG08 CaM0081 SSR 40.31 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG08 CaM0081 SSR 69.18 (cM) Automated name-based View Maps