CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Chickpea-Varshney_168 loci
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG06
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
EST-SSR
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Chickpea - Varshney_168 loci_ICC 283 x ICC 8261 [ View Map Set Info ]
Map Name: LG06
Map Start: 0.00 cM
Map Stop: 65.29 cM
Features by Type:
2 EST-SSR
29 SSR
31 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 31.       of 2 | Next
Chickpea - Varshney_168 loci_ICC 283 x ICC 8261 - LG06
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
NCPGR229 SSR 0.00 Chickpea - Varshney_352 loci - LG06 NCPGR229 SSR 64.71 (cM) Automated name-based View Maps
NCPGR107 SSR 7.57 Chickpea - Varshney_352 loci - LG06 NCPGR107 SSR 61.67 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG06 NCPGR107 SSR 35.33 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG06 NCPGR107 SSR 65.55 (cM) Automated name-based View Maps
TS24 SSR 9.11 Chickpea - Millan_555 loci - LG 6 TS24 RAPD 41.00 (cM) Automated name-based View Maps
Chickpea - Vadez et al. Salt tolerance - LG6 TS24 SSR 89.20 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG06 TS24 SSR 58.39 (cM) Automated name-based View Maps
NCPGR123 SSR 14.15 Chickpea - Varshney_352 loci - LG06 NCPGR123 SSR 53.28 (cM) Automated name-based View Maps
CaM1257 SSR 16.05 Chickpea - Varshney_352 loci - LG06 CaM1257 SSR 48.63 (cM) Automated name-based View Maps
NCPGR200 SSR 19.04 Chickpea - Varshney_241 loci - LG06 NCPGR200 SSR 53.97 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG06 NCPGR200 SSR 50.04 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG06 NCPGR200 SSR 37.20 (cM) Automated name-based View Maps
ICCeM0015 EST-SSR 21.07 Chickpea - Varshney_352 loci - LG06 ICCeM0015 SSR 45.16 (cM) Automated name-based View Maps
CaM0317 SSR 24.12 Chickpea - Chickpea_QTL_SNP - 4 CaM0317 SSR 15.52 (cM) Automated name-based View Maps
Chickpea - Pushpavalli_56_loci - CaLG06 CaM0317 SSR 0.30 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG06 CaM0317 SSR 42.33 (cM) Automated name-based View Maps
H1L161 SSR 24.97 Chickpea - Gujaria_300 loci - LG06 H1L161 SSR 73.70 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG06 H1L161 44.44 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 6 H1L161 SSR 79.30 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG06 H1L161 SSR 39.62 (cM) Automated name-based View Maps
ICCeM0075 EST-SSR 27.35 Chickpea - Varshney_352 loci - LG06 ICCeM0075 EST-SSR 35.53 (cM) Automated name-based View Maps
H5A04 SSR 30.58 Chickpea - Chickpea_QTL_SNP - 4 H5A04 SSR 16.43 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG06 H5A04 SSR 12.29 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG06 H5A04 SSR 32.25 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 4 H5A04 SSR 36.90 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG06 H5A04 SSR 33.24 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 6 H5A04 SSR 79.30 (cM) Automated name-based View Maps
CaM1530 SSR 32.89 Chickpea - Varshney_241 loci - LG06 CaM1530 SSR 31.02 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG06 CaM1530 SSR 12.96 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG06 CaM1530 SSR 31.84 (cM) Automated name-based View Maps
CaM1431 SSR 33.00 Chickpea - Varshney_352 loci - LG06 CaM1431 SSR 31.00 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG06 CaM1431 SSR 13.86 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG06 CaM1431 SSR 30.63 (cM) Automated name-based View Maps
CaM0677 SSR 33.87 Chickpea - 1147 Transcript map(Seq-clone) - LG06 CaM0677 SSR 69.42 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG06 CaM0677 BES-SSR 44.69 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG06 CaM0677 SSR 30.11 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 6 CaM0677 BES-SSR 78.64 (cM) Automated name-based View Maps
ICCM0242a SSR 34.79 Chickpea - Gujaria_300 loci - LG06 ICCM0242a SSR 72.20 (cM) Automated name-based View Maps
Chickpea - 1147 Transcript map(Seq-clone) - LG06 ICCM0242a SSR 69.55 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG06 ICCM0242a 43.73 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 6 ICCM0242a SSR 76.74 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG06 ICCM0242a SSR 29.29 (cM) Automated name-based View Maps
H3A052 SSR 34.90 Chickpea - Varshney_352 loci - LG06 H3A052 SSR 29.18 (cM) Automated name-based View Maps
CaM1790 SSR 35.63 Chickpea - Varshney_352 loci - LG06 CaM1790 SSR 28.49 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG06 CaM1790 SSR 27.80 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG06 CaM1790 SSR 16.18 (cM) Automated name-based View Maps
H6F09 SSR 35.87 Chickpea - Varshney_352 loci - LG06 H6F09 SSR 37.06 (cM) Automated name-based View Maps
CaM1258 SSR 38.82 Chickpea - Varshney_352 loci - LG06 CaM1258 SSR 24.37 (cM) Automated name-based View Maps
CaM1402 SSR 41.22 Chickpea - Thudi_1291 loci - LG 6 CaM1402 BES-SSR 78.43 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG06 CaM1402 BES-SSR 44.39 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG06 CaM1402 SSR 22.03 (cM) Automated name-based View Maps
Chickpea - 1147 Transcript map(Seq-clone) - LG06 CaM1402 SSR 69.60 (cM) Automated name-based View Maps
TA80 SSR 42.40 Chickpea - Nayak_521 loci - LG 6 TA80 Winter_published 127.40 (cM) Automated name-based View Maps
Chickpea - Chickpea_QTL_SNP - 4 TA80 SSR 14.33 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG06 TA80 SSR 52.32 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 6 TA80 SSR 160.10 (cM) Automated name-based View Maps
Chickpea - Vadez et al. Salt tolerance - LG3 TA80 SSR 18.50 (cM) Automated name-based View Maps
CaM1943 SSR 43.17 Chickpea - Varshney_352 loci - LG06 CaM1943 SSR 19.52 (cM) Automated name-based View Maps
TA22 SSR 44.87 Chickpea - Winter_354 loci - LG 6 TA22 SSR 162.40 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 6 TA22 Winter_published 127.40 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 6 TA22 Winter 75.32 (cM) Automated name-based View Maps
TR40 SSR 47.57 Chickpea - Radhika_230 loci - LG 4 TR40 SSR 53.10 (cM) Automated name-based View Maps
Chickpea - Vadez et al. Salt tolerance - LG3 TR40 SSR 14.20 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG06 TR40 SSR 17.80 (cM) Automated name-based View Maps
NCPGR206 SSR 49.41 Chickpea - Varshney_352 loci - LG06 NCPGR206 SSR 14.53 (cM) Automated name-based View Maps