CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Chickpea-Varshney_168 loci
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG01
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
EST-SSR
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Chickpea - Varshney_168 loci_ICC 283 x ICC 8261 [ View Map Set Info ]
Map Name: LG01
Map Start: 0.00 cM
Map Stop: 60.78 cM
Features by Type:
1 EST-SSR
15 SSR
16 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 16 of 16.
Chickpea - Varshney_168 loci_ICC 283 x ICC 8261 - LG01
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TR42 SSR 49.76 Chickpea - Millan_229 loci - LG01 TR42 RAPD 10.00 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG01 TR42 SSR 84.00 (cM) Automated name-based View Maps
Chickpea - Vadez et al. Salt tolerance - LG1 TR42 RAPD 7.70 (cM) Automated name-based View Maps
TR55 SSR 60.78 Chickpea - Varshney_352 loci - LG01 TR55 SSR 95.61 (cM) Automated name-based View Maps
TR43 SSR 41.77 Chickpea - Millan_229 loci - LG01 TR43 RAPD 22.00 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG01 TR43 SSR 63.95 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 2 TR43 SSR 108.50 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 1 TR43 SSR 50.45 (cM) Automated name-based View Maps
Chickpea - Vadez et al. Salt tolerance - LG1 TR43 SSR 5.60 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 1 TR43 SSR 120.20 (cM) Automated name-based View Maps
Chickpea - Chickpea_QTL_SNP - 2 TR43 SSR 18.57 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 1 TR43 Winter_published 122.70 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG01 TR43 SSR 50.10 (cM) Automated name-based View Maps
TA8 SSR 42.57 Chickpea - Nayak_521 loci - LG 1 TA8 Winter_published 122.70 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG01 TA8 Winter 47.60 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG01 TA8 SSR 62.72 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 1 TA8 SSR 123.10 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 1 TA8 Winter 47.53 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG01 TA8 SSR 65.90 (cM) Automated name-based View Maps
TR43II SSR 45.17 Chickpea - Varshney_352 loci - LG01 TR43II SSR 79.66 (cM) Automated name-based View Maps
NCPGR136 SSR 30.86 Chickpea - Varshney_241 loci - LG01 NCPGR136 SSR 68.46 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG01 NCPGR136 SSR 43.49 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG01 NCPGR136 SSR 67.61 (cM) Automated name-based View Maps
CaM0015 SSR 35.92 Chickpea - Varshney_352 loci - LG01 CaM0015 SSR 70.37 (cM) Automated name-based View Maps
Chickpea - Pushpavalli_56_loci - CaLG01 CaM0015 SSR 0.00 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG01 CaM0015 SSR 41.88 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG01 CaM0015 SSR 70.49 (cM) Automated name-based View Maps
TA203 SSR 36.55 Chickpea - Vadez et al. Salt tolerance - LG1 TA203 SSR 4.90 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG01 TA203 SSR 71.04 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 1 TA203 Winter_published 186.90 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 1 TA203 SSR 176.70 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG01 TA203 SSR 40.74 (cM) Automated name-based View Maps
Chickpea - Millan_229 loci - LG01 TA203 RAPD 27.00 (cM) Automated name-based View Maps
CaM1742 SSR 37.01 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG01 CaM1742 SSR 42.07 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG01 CaM1742 SSR 70.67 (cM) Automated name-based View Maps
Chickpea - Pushpavalli_56_loci - CaLG01 CaM1742 SSR 78.50 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG01 CaM1742 SSR 71.26 (cM) Automated name-based View Maps
GAA40 SSR 18.14 Chickpea - Nayak_521 loci - LG 1 GAA40 Winter_published 367.30 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 1 GAA40 SSR 65.92 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG01 GAA40 SSR 48.91 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 1 GAA40 SSR 310.90 (cM) Automated name-based View Maps
CaM0694 SSR 21.41 Chickpea - Varshney_241 loci - LG01 CaM0694 SSR 67.07 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG01 CaM0694 SSR 35.28 (cM) Automated name-based View Maps
NCPGR90 SSR 23.64 Chickpea - Varshney_352 loci - LG01 NCPGR90 SSR 55.89 (cM) Automated name-based View Maps
TA103II SSR 0.00 Chickpea - Varshney_352 loci - LG01 TA103II SSR 32.20 (cM) Automated name-based View Maps
TA113 SSR 5.18 Chickpea - Gujaria_300 loci - LG01 TA113 Winter_published 66.80 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG01 TA113 SSR 81.02 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 1 TA113 SSR 32.90 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 2 TA113 SSR 34.30 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 1 TA113 Winter_published 33.40 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG01 TA113 SSR 37.39 (cM) Automated name-based View Maps
TA122 SSR 10.91 Chickpea - Millan_555 loci - LG 1 TA122 Gene Sequence 27.00 (cM) Automated name-based View Maps
Chickpea - Chickpea_QTL_SNP - 2 TA122 SSR 33.96 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG01 TA122 SSR 44.58 (cM) Automated name-based View Maps
ICCeM0040 EST-SSR 16.75 No other positions