CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Chickpea-Thudi_1291 loci
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG 1
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
BES-SSR
bin1
bin10
bin11
bin12
bin2
bin3
bin4
bin5
bin6
bin7
bin8
bin9
CAPS
Conserved Intron Spanning Region
COS-SNP
DArT
EST-SSR
SSR
Winter
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Chickpea - Thudi et al. 2011_ICC4958 × PI 489777 [ View Map Set Info ]
Map Name: LG 1
Map Start: 0.00 cM
Map Stop: 120.00 cM
Features by Type:
6 BES-SSR
1 bin1
1 bin10
1 bin11
1 bin12
1 bin2
1 bin3
1 bin4
1 bin5
1 bin6
1 bin7
1 bin8
1 bin9
4 CAPS
4 Conserved Intron Spanning Region
15 COS-SNP
77 DArT
2 EST-SSR
12 SSR
36 Winter
168 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 168.       of 7 | Next
Chickpea - Thudi et al. 2011_ICC4958 × PI 489777 - LG 1
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
cpPb-490579 DArT 18.14 No other positions
cpPb-679721 DArT 18.15 No other positions
cpPb-680889 DArT 18.15 No other positions
cpPb-677240 DArT 18.15 No other positions
cpPb-490970 DArT 20.63 No other positions
cpPb-678132 DArT 23.35 No other positions
cpPb-171266 DArT 23.54 No other positions
cpPb-173328 DArT 24.26 No other positions
ACONa COS-SNP 26.11 Chickpea - Nayak_521 loci - LG 1 ACONa Winter_published 49.50 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG01 ACONa SSR 82.50 (cM) Automated name-based View Maps
Chickpea - Millan_555 loci - LG 1 ACONa unknown marker 3.00 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 1 ACONa unknown marker 50.60 (cM) Automated name-based View Maps
ACONb Winter 27.69 Chickpea - Winter_354 loci - LG 1 ACONb unknown marker 60.20 (cM) Automated name-based View Maps
Chickpea - Millan_555 loci - LG 1 ACONb unknown marker 11.00 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 1 ACONb Winter_published 70.30 (cM) Automated name-based View Maps
ISSR8481 Winter 29.58 Chickpea - Gujaria_300 loci - LG01 ISSR8481 Winter 63.30 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG01 ISSR8481 76.11 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 1 ISSR8481 unknown marker 91.40 (cM) Automated name-based View Maps
R36082y Winter 31.17 Chickpea - Hiremath_1328 loci - LG01 R36082y SSR 49.70 (cM) Automated name-based View Maps
CISR064 Conserved Intron Spanning Region 32.44 Chickpea - Gujaria_300 loci - LG01 CISR064 Conserved Intron Spanning Region 58.20 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG01 CISR064 Conserved Intron Spanning Region 77.92 (cM) Automated name-based View Maps
cpPb-491181 DArT 33.14 No other positions
cpPb-488892 DArT 33.18 No other positions
cpPb-681425 DArT 33.18 No other positions
cpPb-680434 DArT 33.19 No other positions
ISSR8552 Winter 35.65 Chickpea - Hiremath_1328 loci - LG01 ISSR8552 74.09 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 1 ISSR8552 unknown marker 201.90 (cM) Automated name-based View Maps
Ps1770858 Winter 37.05 No other positions
ISSR8841 Winter 38.64 Chickpea - Hiremath_1328 loci - LG01 ISSR8841 70.79 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 1 ISSR8841 unknown marker 102.60 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG01 ISSR8841 Winter 54.00 (cM) Automated name-based View Maps
H1G16 SSR 39.57 Chickpea - Hiremath_1328 loci - LG01 H1G16 67.91 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG01 H1G16 SSR 51.90 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 1 H1G16 SSR 117.80 (cM) Automated name-based View Maps
TC77488 COS-SNP 40.52 Chickpea - Hiremath_1328 loci - LG01 TC77488 68.77 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 1 TC77488 COS-SNP 102.30 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG01 TC77488 COS-SNP 41.30 (cM) Automated name-based View Maps
cpPb-491173 DArT 42.14 No other positions
cpPb-677227 DArT 42.21 No other positions
cpPb-678734 DArT 42.48 No other positions