CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Chickpea-Thudi_1291 loci
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG 6
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
BES-SSR
bin1
bin10
bin11
bin2
bin3
bin4
bin5
bin6
bin7
bin8
bin9
CAPS
Conserved Intron Spanning Region
COS-SNP
DArT
EST-SSR
SSR
Winter
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Chickpea - Thudi et al. 2011_ICC4958 × PI 489777 [ View Map Set Info ]
Map Name: LG 6
Map Start: 0.00 cM
Map Stop: 110.00 cM
Features by Type:
25 BES-SSR
1 bin1
1 bin10
1 bin11
1 bin2
1 bin3
1 bin4
1 bin5
1 bin6
1 bin7
1 bin8
1 bin9
4 CAPS
4 Conserved Intron Spanning Region
8 COS-SNP
119 DArT
3 EST-SSR
16 SSR
29 Winter
219 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 219.       of 9 | Next
Chickpea - Thudi et al. 2011_ICC4958 × PI 489777 - LG 6
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Bin6.11 bin11 100.00 - 110.00 No other positions
Bin6.10 bin10 90.00 - 100.00 No other positions
Bin6.09 bin9 80.00 - 90.00 No other positions
Bin6.08 bin8 70.00 - 80.00 No other positions
Bin6.07 bin7 60.00 - 70.00 No other positions
Bin6.06 bin6 50.00 - 60.00 No other positions
Bin6.05 bin5 40.00 - 50.00 No other positions
Bin6.04 bin4 30.00 - 40.00 No other positions
Bin6.03 bin3 20.00 - 30.00 No other positions
Bin6.02 bin2 10.00 - 20.00 No other positions
Bin6.01 bin1 0.00 - 10.00 No other positions
TGDH COS-SNP 95.12 Chickpea - Hiremath_1328 loci - LG06 TGDH 59.72 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 6 TGDH COS-SNP 117.80 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG06 TGDH COS-SNP 60.20 (cM) Automated name-based View Maps
TR44 SSR 94.46 Chickpea - Vadez et al. Salt tolerance - LG3 TR44 SSR 23.10 (cM) Automated name-based View Maps
Chickpea - Chickpea_QTL_SNP - 4 TR44 SSR 9.34 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 1 TR44 SSR 110.50 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG06 TR44 SSR 58.53 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 6 TR44 Winter_published 49.70 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 6 TR44 SSR 103.50 (cM) Automated name-based View Maps
STK25_B Winter 93.49 Chickpea - Millan_555 loci - LG 6 STK25_B RAPD 20.00 (cM) Automated name-based View Maps
CaM1101 BES-SSR 92.63 Chickpea - 1147 Transcript map(Seq-clone) - LG06 CaM1101 SSR 81.60 (cM) Automated name-based View Maps
Chickpea - Chickpea_QTL_SNP - 4 CaM1101 SSR 15.99 (cM) Automated name-based View Maps
Chickpea - Pushpavalli_56_loci - CaLG06 CaM1101 SSR 0.30 (cM) Automated name-based View Maps
APAR2 Winter 92.06 No other positions
TA176 Winter 91.24 Chickpea - Millan_555 loci - LG 6 TA176 RAPD 30.00 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG06 TA176 SSR 53.71 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 6 TA176 Winter_published 127.40 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 6 TA176 SSR 162.40 (cM) Automated name-based View Maps
R2607-1 Winter 90.68 No other positions
TR1 SSR 90.22 Chickpea - Nayak_521 loci - LG 6 TR1 SSR 111.00 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 6 TR1 SSR 146.90 (cM) Automated name-based View Maps
Chickpea - Millan_555 loci - LG 6 TR1 RAPD 17.00 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 4 TR1 SSR 66.60 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG06 TR1 SSR 55.86 (cM) Automated name-based View Maps
Chickpea - Chickpea_QTL_SNP - 4 TR1 SSR 0.00 (cM) Automated name-based View Maps
TS19R_TA118L-1_152 Winter 89.75 No other positions
APFF2.3 Winter 89.52 No other positions
XP-Ca-11617 COS-SNP 88.92 No other positions
CaM0743 BES-SSR 88.46 Chickpea - 1147 Transcript map(Seq-clone) - LG06 CaM0743 SSR 76.37 (cM) Automated name-based View Maps
PR10_mitte COS-SNP 87.94 No other positions
ps169_psatEST_169_03_3 Winter 87.60 No other positions