CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Chickpea-Jaganathan_GBS-SNP_1007 loci
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps CaLG02
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
Conserved Intron Spanning Region
DArT
SNP
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Chickpea - Jaganathan et al. 2014_GBS-SNP Map_ICC 4958 x ICC 1882 [ View Map Set Info ]
Map Name: CaLG02
Map Start: 0.00 cM
Map Stop: 92.16 cM
Features by Type:
1 Conserved Intron Spanning Region
1 DArT
70 SNP
18 SSR
90 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 90.       of 4 | Next
Chickpea - Jaganathan et al. 2014_GBS-SNP Map_ICC 4958 x ICC 1882 - CaLG02
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
CaM0861 SSR 0.00 Chickpea - Varshney_241 loci - LG02 CaM0861 SSR 0.00 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG02 CaM0861 SSR 40.74 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG02 CaM0861 SSR 54.53 (cM) Automated name-based View Maps
CaM0293 SSR 20.48 Chickpea - Varshney_168 loci - LG02 CaM0293 SSR 37.51 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG02 CaM0293 SSR 50.81 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG02 CaM0293 SSR 17.34 (cM) Automated name-based View Maps
H2B061 SSR 23.63 Chickpea - Hiremath_1328 loci - LG02 H2B061 49.99 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 2 H2B061 SSR 51.81 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 2 H2B061 SSR 126.40 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG02 H2B061 SSR 58.00 (cM) Automated name-based View Maps
TA200 SSR 24.26 Chickpea - Varshney_168 loci - LG02 TA200 SSR 46.59 (cM) Automated name-based View Maps
Chickpea - Vadez et al. Salt tolerance - LG2 TA200 SSR 0.00 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG02 TA200 SSR 54.29 (cM) Automated name-based View Maps
TA110 SSR 27.24 Chickpea - Radhika_230 loci - LG 3 TA110 SSR 35.70 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG02 TA110 Winter_published 73.70 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG02 TA110 SSR 26.69 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 2 TA110 Winter 65.80 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 2 TA110 Winter_published 229.30 (cM) Automated name-based View Maps
Chickpea - Millan_555 loci - LG 2 TA110 Gene Sequence 37.00 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 2 TA110 SSR 176.10 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG02 TA110 SSR 74.73 (cM) Automated name-based View Maps
TA206 SSR 29.82 Chickpea - Varshney_168 loci - LG02 TA206 SSR 44.51 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG02 TA206 SSR 27.92 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG02 TA206 SSR 49.07 (cM) Automated name-based View Maps
TA37 SSR 31.53 Chickpea - Vadez et al. Salt tolerance - LG2 TA37 SSR 4.40 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 2 TA37 Winter_published 217.10 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG02 TA37 SSR 46.35 (cM) Automated name-based View Maps
Chickpea - Millan_555 loci - LG 2 TA37 RAPD 29.00 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 2 TA37 SSR 167.80 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 3 TA37 SSR 30.30 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 2 TA37 Winter 57.37 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG02 TA37 SSR 30.83 (cM) Automated name-based View Maps
TA96 SSR 33.99 Chickpea - Vadez et al. Salt tolerance - LG2 TA96 SSR 5.10 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 3 TA96 SSR 10.80 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG02 TA96 SSR 33.38 (cM) Automated name-based View Maps
Chickpea - Vadez et al. Salt tolerance - LG3 TA96 unknown marker 129.90 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 2 TA96 SSR 121.80 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 2 TA96 Winter 56.33 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 2 TA96 Winter_published 114.90 (cM) Automated name-based View Maps
Chickpea - Millan_555 loci - LG 2 TA96 unknown marker 28.00 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG02 TA96 Winter 63.20 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG02 TA96 SSR 47.73 (cM) Automated name-based View Maps
H1P092 SSR 34.67 Chickpea - Hiremath_1328 loci - LG02 H1P092 51.00 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 2 H1P092 SSR 52.14 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG02 H1P092 SSR 37.03 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG02 H1P092 SSR 44.48 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG02 H1P092 SSR 59.20 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG02 H1P092 SSR 34.48 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 2 H1P092 SSR 126.40 (cM) Automated name-based View Maps
TA27 SSR 34.72 Chickpea - Hiremath_1328 loci - LG02 TA27 SSR 48.23 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 2 TA27 SSR 137.60 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 2 TA27 Winter_published 119.40 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 2 TA27 Winter 55.61 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG02 TA27 Winter 64.70 (cM) Automated name-based View Maps
Chickpea - Millan_555 loci - LG 2 TA27 unknown marker 30.00 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG02 TA27 SSR 33.99 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG02 TA27 SSR 43.82 (cM) Automated name-based View Maps
H1H011 SSR 34.79 Chickpea - Varshney_241 loci - LG02 H1H011 SSR 34.20 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 2 H1H011 SSR 126.00 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG02 H1H011 SSR 43.59 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG02 H1H011 50.69 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 2 H1H011 SSR 52.26 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG02 H1H011 SSR 36.84 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG02 H1H011 SSR 57.30 (cM) Automated name-based View Maps
ICCM0082 SSR 35.24 Chickpea - Gujaria_300 loci - LG02 ICCM0082 SSR 57.40 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG02 ICCM0082 50.63 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 6 ICCM0082 SSR 12.52 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 2 ICCM0082 SSR 127.30 (cM) Automated name-based View Maps
Chickpea - 1147 Transcript map(Seq-clone) - LG06 ICCM0082 SSR 61.81 (cM) Automated name-based View Maps
ICCM0247 SSR 35.92 Chickpea - Nayak_521 loci - LG 2 ICCM0247 SSR 127.30 (cM) Automated name-based View Maps
Chickpea - 1147 Transcript map(Seq-clone) - LG06 ICCM0247 SSR 61.38 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 6 ICCM0247 SSR 12.06 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG02 ICCM0247 SSR 57.80 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG02 ICCM0247 50.87 (cM) Automated name-based View Maps
CaM0142 SSR 36.64 Chickpea - Varshney_241 loci - LG02 CaM0142 SSR 36.43 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG02 CaM0142 SSR 41.07 (cM) Automated name-based View Maps
TAA194 SSR 37.57 Chickpea - Vadez et al. Salt tolerance - LG7 TAA194 SSR 4.70 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG02 TAA194 SSR 38.03 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG02 TAA194 SSR 37.99 (cM) Automated name-based View Maps
Ca2_32629763 SNP 47.19 No other positions
Ca2_32481983 SNP 47.21 No other positions
Ca2_32415809 SNP 47.21 No other positions
Ca2_32416166 SNP 47.22 No other positions
Ca2_32058591 SNP 47.41 No other positions
Ca2_32061054 SNP 47.41 No other positions
Ca2_32545320 SNP 47.41 No other positions
Ca2_32061053 SNP 47.46 No other positions
Ca2_32003536 SNP 47.59 No other positions
Ca2_32351839 SNP 47.68 No other positions