CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Chickpea-Jaganathan_GBS-SNP_1007 loci
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps CaLG04
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
CAPS
DArT
EST-SSR
SNP
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Chickpea - Jaganathan et al. 2014_GBS-SNP Map_ICC 4958 x ICC 1882 [ View Map Set Info ]
Map Name: CaLG04
Map Start: 0.00 cM
Map Stop: 112.10 cM
Features by Type:
1 CAPS
7 DArT
1 EST-SSR
342 SNP
35 SSR
386 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 386.       of 16 | Next
Chickpea - Jaganathan et al. 2014_GBS-SNP Map_ICC 4958 x ICC 1882 - CaLG04
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Ca4_48269138 SNP 0.00 No other positions
Ca4_48263603 SNP 0.39 No other positions
Ca4_48275016 SNP 0.41 No other positions
Ca4_48322502 SNP 0.42 No other positions
Ca4_48228061 SNP 0.54 No other positions
Ca4_48228110 SNP 0.55 No other positions
Ca4_48355358 SNP 0.55 No other positions
Ca4_48355468 SNP 0.55 No other positions
Ca4_48498331 SNP 0.56 No other positions
Ca4_48498334 SNP 0.57 No other positions
Ca4_48501662 SNP 0.57 No other positions
Ca4_48465107 SNP 0.58 No other positions
Ca4_48467653 SNP 0.58 No other positions
Ca4_48498181 SNP 0.58 No other positions
Ca4_48485263 SNP 0.60 No other positions
Ca4_48478018 SNP 0.62 No other positions
Ca4_48478303 SNP 0.63 No other positions
Ca4_48475461 SNP 0.63 No other positions
Ca4_48345604 SNP 0.75 No other positions
Ca4_48345608 SNP 0.75 No other positions
Ca4_48457876 SNP 1.15 No other positions
Ca4_47592455 SNP 10.00 No other positions
cpPb-490776 DArT 12.87 Chickpea - Varshney_241 loci - LG04 cpPb-490776 DArT 0.02 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG04 cpPb-490776 DArT 111.98 (cM) Automated name-based View Maps
cpPb-678284 DArT 12.89 Chickpea - Varshney_241 loci - LG04 cpPb-678284 DArT 0.00 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG04 cpPb-678284 DArT 111.98 (cM) Automated name-based View Maps
GA137 SSR 12.91 Chickpea - Vadez et al. Salt tolerance - LG6 GA137 SSR 5.60 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG04 GA137 SSR 105.14 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG04 GA137 SSR 11.73 (cM) Automated name-based View Maps