CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Chickpea-Jaganathan_GBS-SNP_1007 loci
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps CaLG06
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
DArT
EST-SSR
SNP
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Chickpea - Jaganathan et al. 2014_GBS-SNP Map_ICC 4958 x ICC 1882 [ View Map Set Info ]
Map Name: CaLG06
Map Start: 0.00 cM
Map Stop: 104.37 cM
Features by Type:
1 DArT
1 EST-SSR
124 SNP
34 SSR
160 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 160.       of 7 | Next
Chickpea - Jaganathan et al. 2014_GBS-SNP Map_ICC 4958 x ICC 1882 - CaLG06
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
H4H06 SSR 0.00 Chickpea - Radhika_230 loci - LG 2 H4H06 SSR 24.40 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG06 H4H06 SSR 44.44 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG06 H4H06 SSR 44.53 (cM) Automated name-based View Maps
NCPGR87 SSR 4.17 Chickpea - Varshney_352 loci - LG06 NCPGR87 SSR 41.43 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG06 NCPGR87 SSR 40.48 (cM) Automated name-based View Maps
CaM0500 SSR 5.16 Chickpea - Varshney_352 loci - LG06 CaM0500 SSR 20.31 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG06 CaM0500 SSR 20.24 (cM) Automated name-based View Maps
H6G10 SSR 6.13 Chickpea - Hiremath_1328 loci - LG06 H6G10 44.22 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG06 H6G10 SSR 38.47 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG06 H6G10 SSR 73.70 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG06 H6G10 SSR 38.42 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 6 H6G10 SSR 79.00 (cM) Automated name-based View Maps
H1F21 SSR 7.10 Chickpea - Varshney_241 loci - LG06 H1F21 SSR 37.49 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG06 H1F21 SSR 36.78 (cM) Automated name-based View Maps
CaM1125 SSR 8.25 Chickpea - Varshney_241 loci - LG06 CaM1125 SSR 36.28 (cM) Automated name-based View Maps
Chickpea - 1147 Transcript map(Seq-clone) - LG06 CaM1125 SSR 68.24 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 6 CaM1125 BES-SSR 76.16 (cM) Automated name-based View Maps
NCPGR203 SSR 10.87 Chickpea - Varshney_352 loci - LG06 NCPGR203 SSR 34.57 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG06 NCPGR203 SSR 33.65 (cM) Automated name-based View Maps
NCPGR139 SSR 11.56 Chickpea - Varshney_352 loci - LG06 NCPGR139 SSR 33.43 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG06 NCPGR139 SSR 32.95 (cM) Automated name-based View Maps
ICCM0104 SSR 11.96 Chickpea - Hiremath_1328 loci - LG06 ICCM0104 44.12 (cM) Automated name-based View Maps
Chickpea - 1147 Transcript map(Seq-clone) - LG06 ICCM0104 SSR 69.88 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG06 ICCM0104 SSR 32.62 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 6 ICCM0104 SSR 79.30 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG06 ICCM0104 SSR 32.81 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG06 ICCM0104 SSR 73.90 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 6 ICCM0104 SSR 78.02 (cM) Automated name-based View Maps
ICCM0242 SSR 12.15 Chickpea - Varshney_352 loci - LG06 ICCM0242 SSR 32.67 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 6 ICCM0242 SSR 87.80 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG06 ICCM0242 SSR 32.40 (cM) Automated name-based View Maps
H5A04 SSR 12.29 Chickpea - Nayak_521 loci - LG 6 H5A04 SSR 79.30 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG06 H5A04 SSR 32.25 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 4 H5A04 SSR 36.90 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG06 H5A04 SSR 33.24 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG06 H5A04 SSR 30.58 (cM) Automated name-based View Maps
Chickpea - Chickpea_QTL_SNP - 4 H5A04 SSR 16.43 (cM) Automated name-based View Maps
CaM1530 SSR 12.96 Chickpea - Varshney_352 loci - LG06 CaM1530 SSR 31.84 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG06 CaM1530 SSR 31.02 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG06 CaM1530 SSR 32.89 (cM) Automated name-based View Maps
CaM0753 SSR 13.69 Chickpea - Hiremath_1328 loci - LG06 CaM0753 BES-SSR 44.68 (cM) Automated name-based View Maps
Chickpea - 1147 Transcript map(Seq-clone) - LG06 CaM0753 SSR 69.44 (cM) Automated name-based View Maps
Chickpea - Chickpea_QTL_SNP - 4 CAM0753 SSR 21.32 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG06 CaM0753 SSR 30.79 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG06 CaM0753 SSR 31.10 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 6 CaM0753 BES-SSR 78.58 (cM) Automated name-based View Maps
CaM1431 SSR 13.86 Chickpea - Varshney_352 loci - LG06 CaM1431 SSR 31.00 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG06 CaM1431 SSR 30.63 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG06 CaM1431 SSR 33.00 (cM) Automated name-based View Maps
CaM0899 SSR 13.95 Chickpea - Varshney_352 loci - LG06 CaM0899 SSR 30.82 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG06 CaM0899 SSR 30.52 (cM) Automated name-based View Maps
CaM1826 SSR 14.21 Chickpea - Varshney_241 loci - LG06 CaM1826 SSR 30.21 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG06 CaM1826 SSR 30.54 (cM) Automated name-based View Maps
Chickpea - Pushpavalli_56_loci - CaLG06 CaM1826 SSR 0.30 (cM) Automated name-based View Maps
CaM0421 SSR 14.75 Chickpea - Hiremath_1328 loci - LG06 CaM0421 BES-SSR 42.72 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 6 CaM0421 BES-SSR 79.04 (cM) Automated name-based View Maps
Chickpea - 1147 Transcript map(Seq-clone) - LG06 CaM0421 SSR 68.39 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG06 CaM0421 SSR 28.52 (cM) Automated name-based View Maps
Chickpea - Chickpea_QTL_SNP - 4 CaM0421 SSR 31.36 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG06 CaM0421 SSR 27.91 (cM) Automated name-based View Maps
CaM0636 SSR 15.31 Chickpea - Varshney_352 loci - LG06 CaM0636 SSR 29.20 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG06 CaM0636 SSR 29.03 (cM) Automated name-based View Maps
CaM1790 SSR 16.18 Chickpea - Varshney_241 loci - LG06 CaM1790 SSR 27.80 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG06 CaM1790 SSR 35.63 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG06 CaM1790 SSR 28.49 (cM) Automated name-based View Maps
TR7 SSR 17.10 Chickpea - Varshney_352 loci - LG06 TR7 SSR 26.19 (cM) Automated name-based View Maps
Chickpea - Millan_555 loci - LG 6 TR7 unknown marker 28.00 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 6 TR7 SSR 160.10 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG06 TR7 SSR 27.18 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG06 TR7 SSR 51.74 (cM) Automated name-based View Maps
ICCeM0051 EST-SSR 17.69 Chickpea - Varshney_241 loci - LG06 ICCeM0051 EST-SSR 26.47 (cM) Automated name-based View Maps
SCAF96_277735 SNP 19.01 No other positions
Ca6_49552946 SNP 19.54 No other positions
SCAF134_223318 SNP 19.86 No other positions
CaM0389 SSR 21.23 Chickpea - Varshney_241 loci - LG06 CaM0389 SSR 23.79 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG06 CaM0389 SSR 22.93 (cM) Automated name-based View Maps