CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link

**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Chickpea-Jaganathan_GBS-SNP_1007 loci
(Reference Set)
Align Vertically
Maps CaLG07
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Always Display
Conserved Intron Spanning Region
Show Labels: None Landmarks All
Collapse Overlapping
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Greater Than
Automated name-based
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Number of
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Chickpea - Jaganathan et al. 2014_GBS-SNP Map_ICC 4958 x ICC 1882 [ View Map Set Info ]
Map Name: CaLG07
Map Start: 0.00 cM
Map Stop: 96.59 cM
Features by Type:
1 Conserved Intron Spanning Region
1 DArT
33 SNP
24 SSR
60 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 60.       of 3 | Next
Chickpea - Jaganathan et al. 2014_GBS-SNP Map_ICC 4958 x ICC 1882 - CaLG07
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
CaM2131 SSR 0.00 Chickpea - Varshney_241 loci - LG07 CaM2131 SSR 0.00 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG07 CaM2131 SSR 11.75 (cM) Automated name-based View Maps
NCPGR19 SSR 6.62 Chickpea - Varshney_241 loci - LG07 NCPGR19 SSR 12.47 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG07 NCPGR19 SSR 83.64 (cM) Automated name-based View Maps
Ca7_30060299 SNP 12.06 No other positions
Ca7_30004767 SNP 12.06 No other positions
Ca7_30026039 SNP 12.08 No other positions
Ca7_30026017 SNP 12.10 No other positions
Ca7_30029820 SNP 12.14 No other positions
Ca7_31192474 SNP 14.91 No other positions
Ca7_12390774 SNP 18.82 No other positions
Ca7_32875799 SNP 25.16 No other positions
Ca7_33026150 SNP 25.50 No other positions
Ca7_33364329 SNP 27.28 No other positions
Ca7_33461168 SNP 27.50 No other positions
Ca7_33460918 SNP 27.50 No other positions
Ca7_33463300 SNP 27.57 No other positions
Ca7_33380720 SNP 27.70 No other positions
Ca7_33267485 SNP 27.76 No other positions
Ca7_33267496 SNP 27.76 No other positions
Ca7_33364354 SNP 27.81 No other positions
Ca7_33411746 SNP 27.88 No other positions
cpPb-490874 DArT 28.95 Chickpea - Varshney_352 loci - LG07 cpPb-490874 DArT 69.31 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG07 cpPb-490874 DArT 26.80 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 7 cpPb-490874 DArT 36.51 (cM) Automated name-based View Maps
CISR117 Conserved Intron Spanning Region 29.89 Chickpea - Varshney_352 loci - LG07 CISR117 Conserved Intron Spanning Region 67.50 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG07 CISR117 Conserved Intron Spanning Region 28.59 (cM) Automated name-based View Maps
Ca7_14470549 SNP 30.66 No other positions
ICCeM0018 EST-SSR 32.35 Chickpea - Varshney_352 loci - LG03 ICCeM0018 EST-SSR 37.34 (cM) Automated name-based View Maps
Ca7_34277010 SNP 32.91 No other positions