CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Chickpea-Vadez et al. Salt tolerance
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG7
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
Sequence tagged microsatellite site
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Chickpea - Vadez et al. 2012 ICCV2 x JG62 [ View Map Set Info ]
Map Name: LG7
Map Start: 0.00 cM
Map Stop: 9.50 cM
Features by Type:
12 SSR
1 Sequence tagged microsatellite site
13 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 13 of 13.
Chickpea - Vadez et al. 2012 ICCV2 x JG62 - LG7
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TA11 SSR 0.00 Chickpea - Millan_555 loci - LG 5 TA11 RAPD 37.00 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG05 TA11 SSR 51.51 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG05 TA11 SSR 58.44 (cM) Automated name-based View Maps
TA42 SSR 1.70 Chickpea - Millan_555 loci - LG 5 TA42 RAPD 31.00 (cM) Automated name-based View Maps
Chickpea - Chickpea_QTL_SNP - 5 TA42 SSR 13.27 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 1 TA42 SSR 59.70 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG05 TA42 SSR 14.33 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG05 TA42 SSR 12.56 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG05 TA42 SSR 13.97 (cM) Automated name-based View Maps
TA71 SSR 1.70 Chickpea - Nayak_521 loci - LG 5 TA71 Winter_published 171.30 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 7 TA71 SSR 176.30 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG05 TA71 SSR 80.12 (cM) Automated name-based View Maps
Chickpea - Chickpea_QTL_SNP - 5 TA71 SSR 0.00 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG05 TA71 Winter 83.60 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 5 TA71 Winter 87.64 (cM) Automated name-based View Maps
TR59 SSR 1.70 Chickpea - Thudi_1291 loci - LG 5 TR59 SSR 87.30 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 1 TR59 SSR 45.30 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 7 TR59 SSR 173.00 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 5 TR59 Winter_published 170.50 (cM) Automated name-based View Maps
Chickpea - Millan_555 loci - LG 5 TR59 RAPD 31.00 (cM) Automated name-based View Maps
TS35 SSR 1.70 Chickpea - Hiremath_1328 loci - LG05 Ts35 SSR 43.70 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 5 Ts35 SSR 47.60 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 5 Ts35 Winter_published 58.10 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 7 TS35 SSR 63.20 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 1 TS35 SSR 49.30 (cM) Automated name-based View Maps
Chickpea - Chickpea_QTL_SNP - 1 TS35 SSR 0.00 (cM) Automated name-based View Maps
TR29s SSR 1.70 Chickpea - Radhika_230 loci - LG 1 TR29s SSR 52.90 (cM) Automated name-based View Maps
TA194 SSR 1.70 Chickpea - Varshney_352 loci - LG02 TA194 SSR 29.72 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG02 TA194 SSR 46.49 (cM) Automated name-based View Maps
Chickpea - Millan_555 loci - LG 2 TA194 Gene Sequence 19.00 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 2 TA194 SSR 159.10 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 2 TA194 Winter 47.08 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG02 TA194 SSR 44.55 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 2 TA194 Winter_published 166.50 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG02 TA194 Winter 51.00 (cM) Automated name-based View Maps
TS53 SSR 1.70 Chickpea - Millan_555 loci - LG 5 TS53 RAPD 31.00 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 5 TS53 Winter_published 170.50 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 7 TS53 SSR 171.10 (cM) Automated name-based View Maps
TS43 SSR 1.70 Chickpea - Chickpea_QTL_SNP - 1 TS43 SSR 12.89 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 7 TS43 SSR 171.10 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG05 TS43 SSR 79.85 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 5 TS43 Winter_published 147.00 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 1 TS43 SSR 50.40 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 5 TS43 SSR 86.96 (cM) Automated name-based View Maps
TA1 SSR 1.70 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG01 TA1 SSR 34.59 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG01 TA1 Winter 47.50 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG01 TA1 SSR 62.91 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 1 TA1 SSR 123.10 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 1 TA1 Winter_published 122.70 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG01 TA1 SSR 75.83 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 1 TA1 Winter 45.94 (cM) Automated name-based View Maps
TAA194 SSR 4.70 Chickpea - Varshney_352 loci - LG02 TAA194 SSR 37.99 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG02 TAA194 SSR 38.03 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG02 TAA194 SSR 37.57 (cM) Automated name-based View Maps
TR18 SSR 5.70 Chickpea - Varshney_352 loci - LG05 TR18 SSR 9.29 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG05 TR18 SSR 10.25 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG05 TR18 SSR 20.38 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG05 TR18 SSR 0.00 (cM) Automated name-based View Maps
TS38 Sequence tagged microsatellite site 9.50 Chickpea - Millan_229 loci - LG05 TS38 Sequence tagged microsatellite site 21.00 (cM) Automated name-based View Maps