CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Chickpea-Vadez et al. Salt tolerance
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG2
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
RAPD
Sequence tagged microsatellite site
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Chickpea - Vadez et al. 2012 ICCV2 x JG62 [ View Map Set Info ]
Map Name: LG2
Map Start: 0.00 cM
Map Stop: 5.10 cM
Features by Type:
1 RAPD
4 SSR
1 Sequence tagged microsatellite site
6 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 6 of 6.
Chickpea - Vadez et al. 2012 ICCV2 x JG62 - LG2
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TA200 SSR 0.00 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG02 TA200 SSR 24.26 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG02 TA200 SSR 54.29 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG02 TA200 SSR 46.59 (cM) Automated name-based View Maps
TA37 SSR 4.40 Chickpea - Thudi_1291 loci - LG 2 TA37 Winter 57.37 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG02 TA37 SSR 46.35 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 3 TA37 SSR 30.30 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 2 TA37 SSR 167.80 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 2 TA37 Winter_published 217.10 (cM) Automated name-based View Maps
Chickpea - Millan_555 loci - LG 2 TA37 RAPD 29.00 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG02 TA37 SSR 31.53 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG02 TA37 SSR 30.83 (cM) Automated name-based View Maps
TA27 Sequence tagged microsatellite site 5.10 Chickpea - Millan_229 loci - LG02 TA27 Sequence tagged microsatellite site 41.00 (cM) Automated name-based View Maps
TA59 SSR 5.10 Chickpea - Gujaria_300 loci - LG02 TA59 Winter 62.90 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG02 TA59 SSR 47.97 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG02 TA59 SSR 43.33 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 2 TA59 Winter 56.01 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 3 TA59 SSR 21.20 (cM) Automated name-based View Maps
Chickpea - Millan_555 loci - LG 2 TA59 RAPD 30.00 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG02 TA59 SSR 53.12 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 2 TA59 Winter_published 120.10 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 2 TA59 SSR 140.30 (cM) Automated name-based View Maps
NO_Y_14_ta36ta14 RAPD 5.10 No other positions
TA96 SSR 5.10 Chickpea - Hiremath_1328 loci - LG02 TA96 SSR 47.73 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG02 TA96 Winter 63.20 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 3 TA96 SSR 10.80 (cM) Automated name-based View Maps
Chickpea - Millan_555 loci - LG 2 TA96 unknown marker 28.00 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG02 TA96 SSR 33.99 (cM) Automated name-based View Maps
Chickpea - Vadez et al. Salt tolerance - LG3 TA96 unknown marker 129.90 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 2 TA96 SSR 121.80 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 2 TA96 Winter_published 114.90 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 2 TA96 Winter 56.33 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG02 TA96 SSR 33.38 (cM) Automated name-based View Maps