CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Chickpea-Vadez et al. Salt tolerance
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG5
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
SSR
unknown marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Chickpea - Vadez et al. 2012 ICCV2 x JG62 [ View Map Set Info ]
Map Name: LG5
Map Start: 0.00 cM
Map Stop: 31.90 cM
Features by Type:
4 unknown marker
6 SSR
10 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 10 of 10.
Chickpea - Vadez et al. 2012 ICCV2 x JG62 - LG5
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TA114 SSR 0.00 Chickpea - Varshney_352 loci - LG07 TA114 SSR 62.00 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG07 TA114 SSR 15.71 (cM) Automated name-based View Maps
TS46 unknown marker 15.10 Chickpea - Radhika_230 loci - LG 2 TS46 SSR 78.70 (cM) Automated name-based View Maps
TA180 SSR 15.10 Chickpea - Hiremath_1328 loci - LG07 TA180 SSR 44.85 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 5 TA180 SSR 26.30 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 5 TA180 SSR 165.00 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG07 TA180 SSR 37.00 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG07 TA180 SSR 40.28 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 7 TA180 Winter_published 329.00 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 7 TA180 Winter 66.68 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG07 TA180 SSR 55.80 (cM) Automated name-based View Maps
TA21 SSR 15.10 Chickpea - Nayak_521 loci - LG 7 TA21 Winter_published 215.90 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 5 TA21 SSR 48.90 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 7 TA21 Winter 31.88 (cM) Automated name-based View Maps
TA28 SSR 15.10 Chickpea - Radhika_230 loci - LG 5 TA28 SSR 12.70 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 7 TA28 Winter 46.32 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG07 TA28 SSR 24.99 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 5 TA28 SSR 72.80 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 7 TA28 Winter_published 268.20 (cM) Automated name-based View Maps
TA78 SSR 29.80 Chickpea - Winter_354 loci - LG 5 TA78 SSR 61.80 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG07 TA78 SSR 16.58 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 7 TA78 Winter 39.28 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG03 TA78 SSR 48.29 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 5 TA78 SSR 46.40 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 7 TA78 Winter_published 244.80 (cM) Automated name-based View Maps
TA18 SSR 29.80 Chickpea - Hiremath_1328 loci - LG07 TA18 SSR 31.83 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 7 TA18 Winter 41.62 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 5 TA18 SSR 96.90 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 5 TA18 SSR 23.50 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 7 TA18 Winter_published 276.00 (cM) Automated name-based View Maps
NO_112_1NO_X_1 unknown marker 30.70 No other positions
NO_X_13_ unknown marker 30.70 No other positions
TA95rts3 unknown marker 31.90 No other positions