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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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Map Set Chickpea-Pushpavalli_56_loci
(Reference Set)
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Maps CaLG01
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SNP
SSR
Other
 
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Features:		 No Yes
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 Correspondence Options
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Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Image Type: PNG JPEG GIF SVG *
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Size of Dot Plot Pixels: 1
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Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
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Correspondences
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Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Chickpea - Pushpavalli_56_loci_salt_tolerance [ View Map Set Info ]
Map Name: CaLG01
Map Start: 0.00 cM
Map Stop: 78.50 cM
Features by Type:
3 SNP
3 SSR
6 Total

Map Features

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Items 1 to 6 of 6.
Chickpea - Pushpavalli_56_loci_salt_tolerance - CaLG01
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
CaM1742 SSR 78.50 Chickpea - Varshney_352 loci - LG01 CaM1742 SSR 71.26 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG01 CaM1742 SSR 70.67 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG01 CaM1742 SSR 37.01 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG01 CaM1742 SSR 42.07 (cM) Automated name-based View Maps
CKAM1971 SNP 54.70 Chickpea - 1147 Transcript map(Seq-clone) - LG01 CKaM1971 SNP 30.04 (cM) Automated name-based View Maps
CaM1301 SSR 38.10 No other positions
CKAM1443 SNP 27.50 No other positions
CKAM1902 SNP 27.50 No other positions
CaM0015 SSR 0.00 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG01 CaM0015 SSR 41.88 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG01 CaM0015 SSR 70.37 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG01 CaM0015 SSR 35.92 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG01 CaM0015 SSR 70.49 (cM) Automated name-based View Maps