CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Sorghum-Sorghum_SSR_Markers2016
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 2
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Centromere
Heterochromatin
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Sequence [ View Map Type Info ]
Map Set Name: Sorghum - Sorghum_SSR_Markers2016 [ View Map Set Info ]
Map Name: 2
Map Start: 0.00 bp
Map Stop: 77,932,606.00 bp
Features by Type:
1 Centromere
1 Heterochromatin
916 SSR
918 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 917.       of 37 | Next
Sorghum - Sorghum_SSR_Markers2016 - 2
(Click headers to resort)		 Comparative Maps
Feature Type Position (bp) Map Feature Type Position Evidence Actions
Sam66320 SSR 118,703.00 - 119,685.00 No other positions
SB0922 SSR 118,902.00 - 119,201.00 No other positions
SB0923 SSR 126,553.00 - 126,819.00 No other positions
SB0924 SSR 129,908.00 - 130,054.00 No other positions
Xiabtp224 SSR 131,105.00 - 131,349.00 No other positions
Sam10647a SSR 157,264.00 - 158,643.00 No other positions
Sam10647b SSR 157,264.00 - 158,643.00 No other positions
Xiabtp507 SSR 157,999.00 - 158,231.00 No other positions
SB0925 SSR 158,008.00 - 158,202.00 No other positions
Xiabtp331 SSR 158,242.00 - 158,529.00 No other positions
Sam36223 SSR 185,762.00 - 187,273.00 No other positions
SB0926 SSR 186,247.00 - 186,363.00 No other positions
SB0927 SSR 215,379.00 - 215,647.00 No other positions
SB0928 SSR 245,539.00 - 245,738.00 No other positions
SB0929 SSR 246,299.00 - 246,553.00 No other positions
Sam58362a SSR 246,199.00 - 246,867.00 No other positions
Sam58362b SSR 246,199.00 - 246,867.00 No other positions
Sam03605 SSR 370,896.00 - 371,412.00 No other positions
SB0930 SSR 371,263.00 - 371,462.00 No other positions
Sam03604 SSR 372,095.00 - 373,806.00 No other positions
SB0931 SSR 372,114.00 - 372,365.00 No other positions
SB0932 SSR 375,284.00 - 375,467.00 No other positions
SB0933 SSR 386,974.00 - 387,128.00 No other positions
SB0934 SSR 413,561.00 - 413,739.00 No other positions
SB0935 SSR 451,338.00 - 451,569.00 No other positions