CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Chickpea-Thudi_1291 loci
(Reference Set)
Chickpea-Nayak_521 loci
Min.
Correspondences
Align Vertically
Stack
Maps LG 8 LG 8
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
AFLP
BES-SSR
bin1
bin2
bin3
bin4
bin5
bin6
bin7
bin8
CAPS
Conserved Intron Spanning Region
COS-SNP
DArT
EST-SSR
RAPD
SSR
Winter
Winter_published
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Chickpea - Thudi et al. 2011_ICC4958 × PI 489777 [ View Map Set Info ]
Map Name: LG 8
Map Start: 0.00 cM
Map Stop: 80.00 cM
Features by Type:
7 BES-SSR
1 bin1
1 bin2
1 bin3
1 bin4
1 bin5
1 bin6
1 bin7
1 bin8
2 CAPS
4 Conserved Intron Spanning Region
6 COS-SNP
25 DArT
1 EST-SSR
9 SSR
14 Winter
76 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 76.       of 4 | Next
Chickpea - Thudi et al. 2011_ICC4958 × PI 489777 - LG 8
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
CaM0492 BES-SSR 62.74 Chickpea - 1147 Transcript map(Seq-clone) - LG08 CaM0492 SSR 58.12 (cM) Automated name-based View Maps
M121_MtmtGEN_121_02_1 Winter 61.06 No other positions
CaM0493 BES-SSR 60.62 Chickpea - 1147 Transcript map(Seq-clone) - LG08 CaM0493 SSR 55.04 (cM) Automated name-based View Maps
Ca21567 CAPS 58.98 Chickpea - 1147 Transcript map(Seq-clone) - LG08 Ca21567 CAPS 53.51 (cM) Automated name-based View Maps
cpPb-350602 DArT 57.67 No other positions
CaM0814 BES-SSR 56.85 Chickpea - 1147 Transcript map(Seq-clone) - LG08 CaM0814 SSR 50.86 (cM) Automated name-based View Maps
H5B04 SSR 55.23 Chickpea - Nayak_521 loci - LG 8 H5B04 SSR 108.20 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG08 H5B04 52.65 (cM) Automated name-based View Maps
Chickpea - Chickpea_QTL_SNP - 8 H5B04 SSR 25.96 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG08 H5B04 SSR 20.49 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG08 H5B04 SSR 53.33 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 3 H5B04 SSR 68.50 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG08 H5B04 SSR 53.00 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG08 H5B04 SSR 35.56 (cM) Automated name-based View Maps
H1D24 SSR 55.15 Chickpea - Hiremath_1328 loci - LG08 H1D24 52.23 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG08 H1D24 SSR 53.10 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 8 H1D24 SSR 108.20 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG08 H1D24 SSR 60.51 (cM) Automated name-based View Maps
H1C092 SSR 55.11 Chickpea - Nayak_521 loci - LG 8 H1C092 SSR 108.20 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG08 H1C092 SSR 53.00 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG08 H1C092 52.40 (cM) Automated name-based View Maps
CaM0539 BES-SSR 54.82 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG08 CaM0539 SSR 6.46 (cM) Automated name-based View Maps
Chickpea - Chickpea_QTL_SNP - 8 CaM0539 SSR 19.86 (cM) Automated name-based View Maps
Chickpea - 1147 Transcript map(Seq-clone) - LG08 CaM0539 SSR 48.40 (cM) Automated name-based View Maps
CISR090 Conserved Intron Spanning Region 52.93 No other positions
CaM2036 BES-SSR 49.69 Chickpea - 1147 Transcript map(Seq-clone) - LG08 CaM2036 SSR 52.30 (cM) Automated name-based View Maps
PGMb Winter 46.54 Chickpea - Hiremath_1328 loci - LG08 PGMb 46.18 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 8 PGMb unknown marker 82.00 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 8 PGMb Winter_published 60.50 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG08 PGMb Winter 44.60 (cM) Automated name-based View Maps
cpPb-678788 DArT 44.52 No other positions
cpPb-490160 DArT 44.40 No other positions
M599_MtmtGEN599_04_1 Winter 43.20 No other positions
TA3R-TA23L Winter 42.14 Chickpea - Gujaria_300 loci - LG08 TA3R-TA23L Winter 40.20 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG08 TA3R-TA23L SSR 41.38 (cM) Automated name-based View Maps
G6PD Winter 40.00 Chickpea - Winter_354 loci - LG 8 G6PD unknown marker 41.20 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 8 G6PD Winter_published 53.90 (cM) Automated name-based View Maps
ACONc Winter 37.48 Chickpea - Winter_354 loci - LG 8 ACONc unknown marker 66.20 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 8 ACONc Winter_published 53.90 (cM) Automated name-based View Maps
cpPb-682731 DArT 35.66 No other positions
Ts45 SSR 34.40 Chickpea - Hiremath_1328 loci - LG08 Ts45 SSR 30.13 (cM) Automated name-based View Maps
Chickpea - Chickpea_QTL_SNP - 8 TS45 SSR 0.00 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG08 TS45 SSR 26.08 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 6 TS45 SSR 18.00 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG08 Ts45 SSR 30.60 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 8 TS45 SSR 71.00 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG08 TS45 SSR 26.14 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 8 Ts45 Winter_published 47.60 (cM) Automated name-based View Maps
FENR COS-SNP 32.94 Chickpea - Gujaria_300 loci - LG08 FENR COS-SNP 28.80 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 8 FENR COS-SNP 50.40 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG08 FENR 29.62 (cM) Automated name-based View Maps
X60755 COS-SNP 32.15 Chickpea - Nayak_521 loci - LG 8 X60755 COS-SNP 49.20 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG08 X60755 SNP 24.89 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG08 X60755 COS-SNP 27.60 (cM) Automated name-based View Maps
U71 COS-SNP 30.31 Chickpea - Gujaria_300 loci - LG08 U71 COS-SNP 26.20 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 8 U71 COS-SNP 49.20 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG08 U71 SNP 24.48 (cM) Automated name-based View Maps
CaM0787 BES-SSR 28.90 Chickpea - 1147 Transcript map(Seq-clone) - LG08 CaM0787 SSR 18.97 (cM) Automated name-based View Maps