CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Chickpea-Millan_229 loci
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG04b
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
RAPD
Sequence tagged microsatellite site
unknown marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Chickpea - Millan et al. 2010_Consensus map_Intra-specific [ View Map Set Info ]
Map Name: LG04b
Map Start: 0.00 cM
Map Stop: 79.00 cM
Features by Type:
4 unknown marker
45 RAPD
18 Sequence tagged microsatellite site
67 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 67.       of 3 | Next
Chickpea - Millan et al. 2010_Consensus map_Intra-specific - LG04b
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
OPN082000 Sequence tagged microsatellite site 0.00 No other positions
OPR11872 Sequence tagged microsatellite site 7.00 No other positions
GAA47 RAPD 10.00 Chickpea - Hiremath_1328 loci - LG04 GAA47 SSR 80.01 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 4 GAA47 SSR 27.69 (cM) Automated name-based View Maps
Chickpea - Millan_555 loci - LG 4 GAA47 RAPD 26.00 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 4 GAA47 Winter_published 118.00 (cM) Automated name-based View Maps
OPS01870 Sequence tagged microsatellite site 18.00 No other positions
OPY10370 RAPD 20.00 No other positions
OPAF081125 RAPD 24.00 No other positions
TA130 RAPD 28.00 Chickpea - Nayak_521 loci - LG 4 TA130 Winter_published 149.80 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 1 TA130 SSR 6.50 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 4 TA130 SSR 78.30 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 4 TA130 Winter 52.51 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG04 TA130 SSR 44.35 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG04 TA130 SSR 36.59 (cM) Automated name-based View Maps
OPAE04505 Sequence tagged microsatellite site 30.00 No other positions
OPAF121500 RAPD 31.00 No other positions
TA23 RAPD 32.00 Chickpea - Vadez et al. Salt tolerance - LG6 TA23 RAPD 50.80 (cM) Automated name-based View Maps
NO_87_4 Sequence tagged microsatellite site 34.00 No other positions
TA72 RAPD 36.00 Chickpea - Millan_555 loci - LG 4 TA72 RAPD 54.00 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 4 TA72 Winter_published 244.10 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 4 TA72 SSR 107.50 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG04 TA72 SSR 42.91 (cM) Automated name-based View Maps
Chickpea - Vadez et al. Salt tolerance - LG6 TA72 SSR 44.10 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG04 TA72 Winter 51.70 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 4 TA72 Winter 73.06 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 2 TA72 SSR 63.20 (cM) Automated name-based View Maps
NO_88_2 Sequence tagged microsatellite site 37.00 Chickpea - Vadez et al. Salt tolerance - LG6 NO_88_2 Sequence tagged microsatellite site 46.60 (cM) Automated name-based View Maps
SCOPK13 RAPD 37.00 No other positions
SCOPAE19 unknown marker 37.00 No other positions
TR8 unknown marker 38.00 Chickpea - Varshney_241 loci - LG04 TR8 SSR 52.79 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG04 TR8 SSR 58.52 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG04 TR8 SSR 60.16 (cM) Automated name-based View Maps
Chickpea - Vadez et al. Salt tolerance - LG6 TR8 SSR 10.00 (cM) Automated name-based View Maps
TA13 Sequence tagged microsatellite site 38.00 No other positions
OPB071215 Sequence tagged microsatellite site 39.00 No other positions
opng8 RAPD 39.00 Chickpea - Vadez et al. Salt tolerance - LG6 Opng8 RAPD 10.00 (cM) Automated name-based View Maps
STMS26 RAPD 39.00 Chickpea - Winter_354 loci - LG 4 STMS26 SSR 114.20 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 4 STMS26 Winter 75.96 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG04 STMS26 SSR 36.90 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 4 STMS26 Winter_published 270.70 (cM) Automated name-based View Maps
TA146 Sequence tagged microsatellite site 40.00 No other positions
SA15 Sequence tagged microsatellite site 41.00 Chickpea - Vadez et al. Salt tolerance - LG6 SA15 Sequence tagged microsatellite site 49.10 (cM) Automated name-based View Maps
TS54 Sequence tagged microsatellite site 41.00 No other positions
SA20 Sequence tagged microsatellite site 41.00 Chickpea - Vadez et al. Salt tolerance - LG6 SA20 Sequence tagged microsatellite site 49.10 (cM) Automated name-based View Maps
OPAG121146 RAPD 41.00 No other positions