CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Chickpea-Millan_229 loci
(Reference Set) 		Chickpea-Vadez et al. Salt tolerance
Min.
Correspondences
Align Vertically
Stack
Maps LG02 LG2
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
RAPD
Sequence tagged microsatellite site
SSR
unknown marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Chickpea - Millan et al. 2010_Consensus map_Intra-specific [ View Map Set Info ]
Map Name: LG02
Map Start: 0.00 cM
Map Stop: 62.00 cM
Features by Type:
1 unknown marker
9 RAPD
17 Sequence tagged microsatellite site
27 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 27.       of 2 | Next
Chickpea - Millan et al. 2010_Consensus map_Intra-specific - LG02
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
OPAE14712 RAPD 0.00 No other positions
GA20 Sequence tagged microsatellite site 8.00 No other positions
GA16 Sequence tagged microsatellite site 9.00 No other positions
OPW11650 RAPD 15.00 No other positions
OPX151125 RAPD 18.00 No other positions
TS82 Sequence tagged microsatellite site 19.00 No other positions
OPH03930 RAPD 20.00 No other positions
OPY05727 RAPD 22.00 No other positions
OPZ181996 RAPD 22.00 No other positions
TA194 Sequence tagged microsatellite site 26.00 No other positions
TR58-2 Sequence tagged microsatellite site 27.00 No other positions
OPZ03943 RAPD 29.00 No other positions
TA53 Sequence tagged microsatellite site 30.00 No other positions
TAA60 Sequence tagged microsatellite site 31.00 No other positions
TR19 Sequence tagged microsatellite site 35.00 Chickpea - Millan_555 loci - LG 2 TR19 Sequence tagged microsatellite site 32.00 (cM) Automated name-based View Maps
CS27 unknown marker 38.00 Chickpea - Winter_354 loci - LG 2 CS27 unknown marker 114.70 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 2 CS27 Winter 113.10 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 3 CS27 unknown marker 17.20 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 2 CS27 Winter 57.78 (cM) Automated name-based View Maps
Chickpea - Millan_555 loci - LG 2 CS27 RAPD 27.00 (cM) Automated name-based View Maps
NOY141 RAPD 38.00 No other positions
TA37 Sequence tagged microsatellite site 39.00 No other positions
Ta36Ta146 Sequence tagged microsatellite site 39.00 No other positions
TA96 Sequence tagged microsatellite site 40.00 No other positions
TA59 Sequence tagged microsatellite site 40.00 No other positions
TA27 Sequence tagged microsatellite site 41.00 Chickpea - Vadez et al. Salt tolerance - LG2 TA27 Sequence tagged microsatellite site 5.10 (cM) Automated name-based View Maps
TS47 Sequence tagged microsatellite site 41.00 No other positions
TA200 Sequence tagged microsatellite site 42.00 Chickpea - Millan_555 loci - LG 2 TA200 Sequence tagged microsatellite site 31.00 (cM) Automated name-based View Maps
RP17 RAPD 45.00 No other positions