CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Chickpea-Nayak_521 loci
(Reference Set)
Chickpea-Winter_354 loci
Min.
Correspondences
Align Vertically
Stack
Maps LG 1 LG 1
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
AFLP
COS-SNP
Gene Sequence
RAPD
Sequence tagged microsatellite site
SSR
unknown marker
Winter
Winter_published
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Chickpea - Nayak et al. 2010_ICC 4958 X PI 489777 [ View Map Set Info ]
Map Name: LG 1
Map Start: 0.00 cM
Map Stop: 431.10 cM
Features by Type:
7 AFLP
6 COS-SNP
1 Gene Sequence
9 RAPD
7 SSR
1 Sequence tagged microsatellite site
4 Winter
25 Winter_published
60 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 60.       of 3 | Next
Chickpea - Nayak et al. 2010_ICC 4958 X PI 489777 - LG 1
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
STMS13 Sequence tagged microsatellite site 0.00 Chickpea - Millan_555 loci - LG 1 STMS13 Sequence tagged microsatellite site 21.00 (cM) Automated name-based View Maps
CPCB2 COS-SNP 7.10 Chickpea - Hiremath_1328 loci - LG01 CPCB2 105.56 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 1 CPCB2 COS-SNP 9.79 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG01 CPCB2 COS-SNP 84.00 (cM) Automated name-based View Maps
OPI63 RAPD 16.30 No other positions
TA113 Winter_published 33.40 Chickpea - Gujaria_300 loci - LG01 TA113 Winter_published 66.80 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG01 TA113 SSR 81.02 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG01 TA113 SSR 5.18 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 2 TA113 SSR 34.30 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG01 TA113 SSR 37.39 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 1 TA113 SSR 32.90 (cM) Automated name-based View Maps
ACONa Winter_published 49.50 Chickpea - Thudi_1291 loci - LG 1 ACONa COS-SNP 26.11 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG01 ACONa SSR 82.50 (cM) Automated name-based View Maps
Chickpea - Millan_555 loci - LG 1 ACONa unknown marker 3.00 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 1 ACONa unknown marker 50.60 (cM) Automated name-based View Maps
OPG09_1 RAPD 61.10 No other positions
OPD03_3 RAPD 66.60 No other positions
ACONb Winter_published 70.30 Chickpea - Millan_555 loci - LG 1 ACONb unknown marker 11.00 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 1 ACONb unknown marker 60.20 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 1 ACONb Winter 27.69 (cM) Automated name-based View Maps
OPQ13_2 RAPD 77.00 No other positions
marker8481 Winter_published 83.40 No other positions
marker8841 Winter_published 93.80 No other positions
CAMCAT10 AFLP 97.00 No other positions
TC77488 COS-SNP 102.30 Chickpea - Thudi_1291 loci - LG 1 TC77488 COS-SNP 40.52 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG01 TC77488 68.77 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG01 TC77488 COS-SNP 41.30 (cM) Automated name-based View Maps
H3H021 SSR 104.10 Chickpea - Hiremath_1328 loci - LG01 H3H021 66.73 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG01 H3H021 SSR 41.90 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 1 H3H021 SSR 42.75 (cM) Automated name-based View Maps
C81 Winter 106.60 Chickpea - Thudi_1291 loci - LG 1 C81 Winter 45.54 (cM) Automated name-based View Maps
ICCM0245 SSR 106.60 Chickpea - Gujaria_300 loci - LG01 ICCM0245 SSR 47.10 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 1 ICCM0245 SSR 45.23 (cM) Automated name-based View Maps
Chickpea - 1147 Transcript map(Seq-clone) - LG01 ICCM0245 SSR 60.22 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG01 ICCM0245 64.42 (cM) Automated name-based View Maps
ICCM0297 SSR 108.10 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG01 ICCM0297 SSR 32.01 (cM) Automated name-based View Maps
Chickpea - 1147 Transcript map(Seq-clone) - LG01 ICCM0297 SSR 56.98 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG01 ICCM0297 SSR 77.94 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG01 ICCM0297 61.95 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG01 ICCM0297 SSR 63.96 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG01 ICCM0297 SSR 43.30 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 1 ICCM0297 SSR 46.79 (cM) Automated name-based View Maps
TC80236 COS-SNP 111.30 Chickpea - Thudi_1291 loci - LG 1 TC80236 COS-SNP 51.50 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG01 TC80236 COS-SNP 48.10 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG01 TC80236 57.24 (cM) Automated name-based View Maps
H2A08 SSR 112.60 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG01 H2A08 SSR 48.23 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG01 H2A08 SSR 63.66 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 1 H2A08 SSR 52.61 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG01 H2A08 SSR 49.40 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG01 H2A08 SSR 76.97 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG01 H2A08 55.57 (cM) Automated name-based View Maps
AJ005043 COS-SNP 113.20 Chickpea - Gujaria_300 loci - LG01 AJ005043 COS-SNP 44.50 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG01 AJ005043 58.67 (cM) Automated name-based View Maps
H1G16 SSR 117.80 Chickpea - Hiremath_1328 loci - LG01 H1G16 67.91 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG01 H1G16 SSR 51.90 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 1 H1G16 SSR 39.57 (cM) Automated name-based View Maps
TR43 Winter_published 122.70 Chickpea - Thudi_1291 loci - LG 1 TR43 SSR 50.45 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 2 TR43 SSR 108.50 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG01 TR43 SSR 63.95 (cM) Automated name-based View Maps
Chickpea - Millan_229 loci - LG01 TR43 RAPD 22.00 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG01 TR43 SSR 41.77 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG01 TR43 SSR 50.10 (cM) Automated name-based View Maps
Chickpea - Chickpea_QTL_SNP - 2 TR43 SSR 18.57 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 1 TR43 SSR 120.20 (cM) Automated name-based View Maps
Chickpea - Vadez et al. Salt tolerance - LG1 TR43 SSR 5.60 (cM) Automated name-based View Maps
TA1 Winter_published 122.70 Chickpea - Winter_354 loci - LG 1 TA1 SSR 123.10 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG01 TA1 SSR 62.91 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG01 TA1 Winter 47.50 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG01 TA1 SSR 34.59 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 1 TA1 Winter 45.94 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG01 TA1 SSR 75.83 (cM) Automated name-based View Maps
Chickpea - Vadez et al. Salt tolerance - LG7 TA1 SSR 1.70 (cM) Automated name-based View Maps
TA8 Winter_published 122.70 Chickpea - Varshney_352 loci - LG01 TA8 SSR 65.90 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 1 TA8 SSR 123.10 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG01 TA8 SSR 42.57 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG01 TA8 Winter 47.60 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 1 TA8 Winter 47.53 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG01 TA8 SSR 62.72 (cM) Automated name-based View Maps
FP_i Winter_published 133.40 No other positions