CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Chickpea-Nayak_521 loci
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG 6
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
AFLP
COS-SNP
Gene Sequence
RAPD
SSR
unknown marker
Winter
Winter_published
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Chickpea - Nayak et al. 2010_ICC 4958 X PI 489777 [ View Map Set Info ]
Map Name: LG 6
Map Start: 0.00 cM
Map Stop: 281.80 cM
Features by Type:
9 AFLP
10 COS-SNP
4 Gene Sequence
1 unknown marker
13 RAPD
15 SSR
1 Winter
16 Winter_published
69 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 69.       of 3 | Next
Chickpea - Nayak et al. 2010_ICC 4958 X PI 489777 - LG 6
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
ICCM0104 SSR 79.30 Chickpea - Varshney_241 loci - LG06 ICCM0104 SSR 32.62 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG06 ICCM0104 SSR 32.81 (cM) Automated name-based View Maps
Chickpea - 1147 Transcript map(Seq-clone) - LG06 ICCM0104 SSR 69.88 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 6 ICCM0104 SSR 78.02 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG06 ICCM0104 44.12 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG06 ICCM0104 SSR 73.90 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG06 ICCM0104 SSR 11.96 (cM) Automated name-based View Maps
A2ga2_R6 Gene Sequence 79.30 No other positions
H5A04 SSR 79.30 Chickpea - Varshney_241 loci - LG06 H5A04 SSR 32.25 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG06 H5A04 SSR 30.58 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG06 H5A04 SSR 33.24 (cM) Automated name-based View Maps
Chickpea - Chickpea_QTL_SNP - 4 H5A04 SSR 16.43 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 4 H5A04 SSR 36.90 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG06 H5A04 SSR 12.29 (cM) Automated name-based View Maps
H3B08 SSR 79.30 Chickpea - Radhika_230 loci - LG 4 H3B08 SSR 31.50 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 6 H3B08 SSR 78.62 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG06 H3B08 SSR 73.50 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG06 H3B08 44.51 (cM) Automated name-based View Maps
ICCM0191 SSR 79.30 Chickpea - Gujaria_300 loci - LG06 ICCM0191 SSR 73.40 (cM) Automated name-based View Maps
Chickpea - 1147 Transcript map(Seq-clone) - LG06 ICCM0191 SSR 69.34 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG06 ICCM0191 45.21 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 6 ICCM0191 SSR 78.70 (cM) Automated name-based View Maps
H1L161 SSR 79.30 Chickpea - Varshney_352 loci - LG06 H1L161 SSR 39.62 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG06 H1L161 44.44 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG06 H1L161 SSR 24.97 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG06 H1L161 SSR 73.70 (cM) Automated name-based View Maps
ICCM0284 SSR 136.30 No other positions
H6G10 SSR 79.00 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG06 H6G10 SSR 6.13 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG06 H6G10 44.22 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG06 H6G10 SSR 38.47 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG06 H6G10 SSR 73.70 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG06 H6G10 SSR 38.42 (cM) Automated name-based View Maps
H3A03 SSR 79.00 Chickpea - Gujaria_300 loci - LG06 H3A03 SSR 74.20 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 6 H3A03 SSR 77.85 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG06 H3A03 43.93 (cM) Automated name-based View Maps
OPD3_1 RAPD 67.00 No other positions
ACMCAC04 AFLP 57.50 No other positions
AAMCTA08 AFLP 57.50 No other positions
CAMCTA02 AFLP 57.50 No other positions
CAMCAT07 AFLP 57.50 No other positions
OPJ13_2 RAPD 57.50 No other positions
CAMCTA04 AFLP 55.30 No other positions
ACMCAC01 AFLP 53.00 No other positions
TR44 Winter_published 49.70 Chickpea - Vadez et al. Salt tolerance - LG3 TR44 SSR 23.10 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG06 TR44 SSR 58.53 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 6 TR44 SSR 94.46 (cM) Automated name-based View Maps
Chickpea - Chickpea_QTL_SNP - 4 TR44 SSR 9.34 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 6 TR44 SSR 103.50 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 1 TR44 SSR 110.50 (cM) Automated name-based View Maps
OPA17_2 RAPD 42.00 No other positions
OPC15_4 RAPD 34.60 No other positions
TA14 Winter_published 14.60 Chickpea - Varshney_168 loci - LG06 TA14 SSR 63.75 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG06 TA14 SSR 1.93 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG06 TA14 SSR 0.00 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 6 TA14 SSR 92.30 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG06 TA14 SSR 45.22 (cM) Automated name-based View Maps
Chickpea - Millan_555 loci - LG 6 TA14 RAPD 0.00 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG06 TA14 SSR 65.29 (cM) Automated name-based View Maps
STMS15 SSR 13.20 Chickpea - Winter_354 loci - LG 6 STMS15 SSR 88.70 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG06 STMS15 SSR 62.67 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG06 STMS15 SSR 3.51 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 4 STMS15 SSR 97.30 (cM) Automated name-based View Maps
Chickpea - Millan_555 loci - LG 6 STMS15 RAPD 4.00 (cM) Automated name-based View Maps
DNABP COS-SNP 10.30 Chickpea - Gujaria_300 loci - LG06 DNABP COS-SNP 104.10 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG06 DNABP 69.12 (cM) Automated name-based View Maps
OPAB9_5 RAPD 0.00 No other positions
H1I16 SSR 281.80 Chickpea - Hiremath_1328 loci - LG06 H1I16 37.41 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG06 H1I16 SSR 6.40 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG06 H1I16 SSR 102.65 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG06 H1I16 SSR 105.84 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG06 H1I16 SSR 82.11 (cM) Automated name-based View Maps