CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Chickpea-Radhika_230 loci
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG 5
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
RAPD
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Chickpea - Radhika et al. 2007_Consensus_Intra-specific [ View Map Set Info ]
Map Name: LG 5
Map Start: 0.00 cM
Map Stop: 65.90 cM
Features by Type:
4 RAPD
21 SSR
25 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 25.
Chickpea - Radhika et al. 2007_Consensus_Intra-specific - LG 5
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
UBC810 RAPD 0.00 No other positions
UBC165 RAPD 0.60 No other positions
H1N12 SSR 3.70 Chickpea - Thudi_1291 loci - LG 7 H1N12 SSR 7.88 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 5 H1N12 SSR 305.60 (cM) Automated name-based View Maps
UBC743y RAPD 10.80 No other positions
TA28 SSR 12.70 Chickpea - Winter_354 loci - LG 5 TA28 SSR 72.80 (cM) Automated name-based View Maps
Chickpea - Vadez et al. Salt tolerance - LG5 TA28 SSR 15.10 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG07 TA28 SSR 24.99 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 7 TA28 Winter 46.32 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 7 TA28 Winter_published 268.20 (cM) Automated name-based View Maps
UBC743x RAPD 16.50 No other positions
TA117 SSR 21.10 Chickpea - Varshney_352 loci - LG07 TA117 SSR 91.02 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG07 TA117 SSR 45.78 (cM) Automated name-based View Maps
TA18 SSR 23.50 Chickpea - Thudi_1291 loci - LG 7 TA18 Winter 41.62 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 7 TA18 Winter_published 276.00 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 5 TA18 SSR 96.90 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG07 TA18 SSR 31.83 (cM) Automated name-based View Maps
Chickpea - Vadez et al. Salt tolerance - LG5 TA18 SSR 29.80 (cM) Automated name-based View Maps
H4D02 SSR 23.70 No other positions
TA180 SSR 26.30 Chickpea - Varshney_352 loci - LG07 TA180 SSR 55.80 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG07 TA180 SSR 44.85 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG07 TA180 SSR 37.00 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG07 TA180 SSR 40.28 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 7 TA180 Winter 66.68 (cM) Automated name-based View Maps
Chickpea - Vadez et al. Salt tolerance - LG5 TA180 SSR 15.10 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 7 TA180 Winter_published 329.00 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 5 TA180 SSR 165.00 (cM) Automated name-based View Maps
H4B03 SSR 26.50 No other positions
NCPGR94 SSR 28.50 No other positions
H3H12/1 SSR 30.60 No other positions
H1E23x SSR 32.00 No other positions
H1A10x SSR 32.50 No other positions
H3G06/2 SSR 33.90 No other positions
H3G06 SSR 34.90 No other positions
STMS25 SSR 36.10 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG07 STMS25 SSR 42.78 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG07 STMS25 SSR 62.49 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG07 STMS25 SSR 64.38 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 15 STMS25 SSR 0.00 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 7 STMS25 Winter 5.90 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 5 STMS25 Winter_published 305.90 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG07 STMS25 SSR 32.15 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG07 STMS25 SSR 19.01 (cM) Automated name-based View Maps
TA140 SSR 37.70 Chickpea - Winter_354 loci - LG 5 TA140 SSR 87.60 (cM) Automated name-based View Maps
STMS9 SSR 40.20 Chickpea - Thudi_1291 loci - LG 7 STMS9 SSR 63.55 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG03 STMS9 SSR 42.72 (cM) Automated name-based View Maps
TAA55 SSR 41.60 No other positions
H3E05/1 SSR 43.20 No other positions
TA78 SSR 46.40 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG03 TA78 SSR 48.29 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG07 TA78 SSR 16.58 (cM) Automated name-based View Maps
Chickpea - Vadez et al. Salt tolerance - LG5 TA78 SSR 29.80 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 7 TA78 Winter_published 244.80 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 7 TA78 Winter 39.28 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 5 TA78 SSR 61.80 (cM) Automated name-based View Maps
NCPGR52 SSR 48.10 No other positions
STMS21y SSR 65.90 No other positions