CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Chickpea-Winter_354 loci
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG 5
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
AFLP
RAPD
SSR
unknown marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Chickpea - Winter et al. 2000_ICC 4958 × PI 489777 [ View Map Set Info ]
Map Name: LG 5
Map Start: 0.00 cM
Map Stop: 181.00 cM
Features by Type:
10 AFLP
1 unknown marker
5 RAPD
10 SSR
26 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 26.       of 2 | Next
Chickpea - Winter et al. 2000_ICC 4958 × PI 489777 - LG 5
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
ECAMCTA11 AFLP 0.00 No other positions
ECAMCAG01 AFLP 14.60 No other positions
ECAMCTA06 AFLP 15.80 No other positions
ECAMCAT05 AFLP 16.80 No other positions
ECAMCAT02 AFLP 19.80 No other positions
ECAMCTA12 AFLP 23.20 No other positions
GAA44 SSR 30.30 Chickpea - Hiremath_1328 loci - LG07 GAA44 SSR 36.92 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 7 GAA44 Winter_published 194.00 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 7 GAA44 SSR 64.44 (cM) Automated name-based View Maps
TA21 SSR 48.90 Chickpea - Vadez et al. Salt tolerance - LG5 TA21 SSR 15.10 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 7 TA21 Winter_published 215.90 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 7 TA21 Winter 31.88 (cM) Automated name-based View Maps
TA78 SSR 61.80 Chickpea - Nayak_521 loci - LG 7 TA78 Winter_published 244.80 (cM) Automated name-based View Maps
Chickpea - Vadez et al. Salt tolerance - LG5 TA78 SSR 29.80 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 7 TA78 Winter 39.28 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG07 TA78 SSR 16.58 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG03 TA78 SSR 48.29 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 5 TA78 SSR 46.40 (cM) Automated name-based View Maps
ECAMCTA03 AFLP 68.30 No other positions
EAAMCTT04 AFLP 72.80 No other positions
EACMCAC06 AFLP 72.80 No other positions
TA28 SSR 72.80 Chickpea - Thudi_1291 loci - LG 7 TA28 Winter 46.32 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 7 TA28 Winter_published 268.20 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG07 TA28 SSR 24.99 (cM) Automated name-based View Maps
Chickpea - Vadez et al. Salt tolerance - LG5 TA28 SSR 15.10 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 5 TA28 SSR 12.70 (cM) Automated name-based View Maps
TS62 SSR 76.40 No other positions
TAA58 SSR 82.40 Chickpea - Varshney_168 loci - LG07 TAA58 SSR 16.59 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG07 TAA58 SSR 33.98 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 7 TAA58 Winter_published 268.20 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 7 TAA58 Winter 45.59 (cM) Automated name-based View Maps
TAA59 SSR 84.20 Chickpea - Nayak_521 loci - LG 7 TAA59 Winter_published 268.70 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 7 TAA59 Winter 45.45 (cM) Automated name-based View Maps
TA140 SSR 87.60 Chickpea - Radhika_230 loci - LG 5 TA140 SSR 37.70 (cM) Automated name-based View Maps
TA18 SSR 96.90 Chickpea - Vadez et al. Salt tolerance - LG5 TA18 SSR 29.80 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 5 TA18 SSR 23.50 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 7 TA18 Winter_published 276.00 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG07 TA18 SSR 31.83 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 7 TA18 Winter 41.62 (cM) Automated name-based View Maps
OPT18-2 RAPD 101.60 No other positions
OPC20-2 RAPD 110.20 No other positions
ECAMCAT04 AFLP 111.00 No other positions
OPA12-2 RAPD 115.80 No other positions
OPA12-3 RAPD 123.60 No other positions
OPG09-2 RAPD 143.30 No other positions
TA180 SSR 165.00 Chickpea - Hiremath_1328 loci - LG07 TA180 SSR 44.85 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 7 TA180 Winter_published 329.00 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 5 TA180 SSR 26.30 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG07 TA180 SSR 37.00 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 7 TA180 Winter 66.68 (cM) Automated name-based View Maps
Chickpea - Vadez et al. Salt tolerance - LG5 TA180 SSR 15.10 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG07 TA180 SSR 40.28 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG07 TA180 SSR 55.80 (cM) Automated name-based View Maps