CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Chickpea-Winter_354 loci
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG 3
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
AFLP
RAPD
SSR
unknown marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Chickpea - Winter et al. 2000_ICC 4958 × PI 489777 [ View Map Set Info ]
Map Name: LG 3
Map Start: 0.00 cM
Map Stop: 250.40 cM
Features by Type:
10 AFLP
7 unknown marker
8 RAPD
18 SSR
43 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 43.       of 2 | Next
Chickpea - Winter et al. 2000_ICC 4958 × PI 489777 - LG 3
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
OPO04-1 RAPD 0.00 Chickpea - Millan_555 loci - LG 3 OPO04-1 RAPD 35.00 (cM) Automated name-based View Maps
R360-8-3 unknown marker 7.60 No other positions
OPP15-2 RAPD 12.30 Chickpea - Millan_555 loci - LG 3 OPP15-2 Gene Sequence 54.00 (cM) Automated name-based View Maps
EACMCAC08 AFLP 22.00 No other positions
OPC14-5 RAPD 24.10 Chickpea - Millan_555 loci - LG 3 OPC14-5 AFLP 63.00 (cM) Automated name-based View Maps
OPU03-4 RAPD 33.80 No other positions
GA31 SSR 36.90 Chickpea - Thudi_1291 loci - LG 3 GA31 Winter 48.18 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG03 GA31 SSR 62.25 (cM) Automated name-based View Maps
Chickpea - Millan_555 loci - LG 3 GA31 RAPD 44.00 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 3 GA31 Winter_published 17.20 (cM) Automated name-based View Maps
TS19 SSR 46.60 Chickpea - Nayak_521 loci - LG 3 TS19 Winter_published 23.70 (cM) Automated name-based View Maps
Chickpea - Millan_555 loci - LG 3 TS19 RAPD 40.00 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG03 TS19 SSR 36.05 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 3 TS19 SSR 49.03 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 1 TS19 SSR 98.00 (cM) Automated name-based View Maps
EACMCAC12 AFLP 62.70 No other positions
EAAMCTA02 AFLP 72.10 No other positions
EAAMCTA06 AFLP 85.50 No other positions
EAAMCTA07 AFLP 85.50 No other positions
ECAMCTA01 AFLP 87.70 No other positions
STMS10 SSR 88.70 Chickpea - Radhika_230 loci - LG 1 STMS10 SSR 70.70 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 3 STMS10 SSR 58.50 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG03 STMS10 SSR 49.78 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG03 STMS10 SSR 18.38 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG03 STMS10 SSR 39.48 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 3 STMS10 Winter 22.49 (cM) Automated name-based View Maps
STMS14 SSR 89.70 Chickpea - Radhika_230 loci - LG 1 STMS14 SSR 85.70 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG03 STMS14 SSR 42.30 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 3 STMS14 Winter 20.81 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 3 STMS14 Winter_published 59.40 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG03 STMS14 SSR 38.05 (cM) Automated name-based View Maps
STMS28 SSR 94.60 Chickpea - Nayak_521 loci - LG 3 STMS28 Winter_published 59.90 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 3 STMS28 Winter 17.24 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 1 STMS28 SSR 85.40 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG03 STMS28 SSR 36.85 (cM) Automated name-based View Maps
TA135 SSR 96.20 Chickpea - Gujaria_300 loci - LG03 TA135 Winter 1.30 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG03 TA135 SSR 37.90 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG03 TA135 SSR 37.31 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 3 TA135 Winter_published 60.20 (cM) Automated name-based View Maps
Chickpea - Millan_555 loci - LG 3 TA135 RAPD 46.00 (cM) Automated name-based View Maps
TR2 SSR 96.20 Chickpea - Varshney_352 loci - LG03 TR2 SSR 20.34 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG03 TR2 SSR 54.19 (cM) Automated name-based View Maps
Chickpea - Chickpea_QTL_SNP - 6 TR2 SSR 0.00 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG03 TR2 SSR 0.00 (cM) Automated name-based View Maps
Chickpea - Vadez et al. Salt tolerance - LG4 TR2 unknown marker 3.50 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 3 TR2 Winter_published 60.30 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 3 TR2 SSR 37.96 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG03 TR2 SSR 37.57 (cM) Automated name-based View Maps
TR31 SSR 96.20 Chickpea - Hiremath_1328 loci - LG03 TR31 SSR 37.70 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG03 TR31 SSR 4.60 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG03 TR31 SSR 0.00 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 1 TR31 SSR 84.90 (cM) Automated name-based View Maps
Chickpea - Millan_555 loci - LG 3 TR31 RAPD 47.00 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 3 TR31 Winter_published 60.40 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG03 TR31 SSR 70.77 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 3 TR31 SSR 21.73 (cM) Automated name-based View Maps
TA34 SSR 96.20 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG03 TA34 SSR 54.30 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG03 TA34 SSR 32.27 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG03 TA34 SSR 12.71 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 3 TA34 Winter_published 60.40 (cM) Automated name-based View Maps
STMS4 SSR 96.20 Chickpea - Millan_555 loci - LG 3 STMS4 RAPD 47.00 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 3 STMS4 Winter_published 60.40 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 3 STMS4 Winter 21.12 (cM) Automated name-based View Maps
STMS23 SSR 97.80 Chickpea - Radhika_230 loci - LG 1 STMS23 SSR 93.70 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 3 STMS23 Winter 20.95 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 3 STMS23 Winter_published 61.00 (cM) Automated name-based View Maps
TR56 SSR 99.40 Chickpea - Thudi_1291 loci - LG 3 TR56 SSR 15.06 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG03 TR56 SSR 16.37 (cM) Automated name-based View Maps
Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG03 TR56 SSR 48.91 (cM) Automated name-based View Maps
Chickpea - Radhika_230 loci - LG 1 TR56 SSR 67.70 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG03 TR56 SSR 33.14 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 3 TR56 Winter_published 61.40 (cM) Automated name-based View Maps
ECAMCAT06 AFLP 100.00 No other positions
PGMa unknown marker 101.20 Chickpea - Nayak_521 loci - LG 3 PGMa Winter_published 82.80 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 3 PGMa Winter 18.73 (cM) Automated name-based View Maps