CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Chickpea-Gujaria_300 loci
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG06
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
CAPS
Conserved Intron Spanning Region
COS-SNP
DArT
EST-SSR
SSR
Winter
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Chickpea - Gujaria et al. 2011_ICC 4958 × PI 489777 [ View Map Set Info ]
Map Name: LG06
Map Start: 0.00 cM
Map Stop: 113.60 cM
Features by Type:
2 CAPS
4 Conserved Intron Spanning Region
8 COS-SNP
3 DArT
1 EST-SSR
11 SSR
11 Winter
40 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 40.       of 2 | Next
Chickpea - Gujaria et al. 2011_ICC 4958 × PI 489777 - LG06
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TC88727 COS-SNP 0.00 Chickpea - Nayak_521 loci - LG 6 TC88727 COS-SNP 270.10 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG06 TC88727 42.42 (cM) Automated name-based View Maps
H1I16 SSR 6.40 Chickpea - Jaganathan_GBS-SNP_1007 loci - CaLG06 H1I16 SSR 82.11 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 6 H1I16 SSR 281.80 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG06 H1I16 37.41 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG06 H1I16 SSR 102.65 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG06 H1I16 SSR 105.84 (cM) Automated name-based View Maps
OPC11-1 Winter 17.50 Chickpea - Hiremath_1328 loci - LG07 OPC11-1 RAPD 52.28 (cM) Automated name-based View Maps
TA4L-TA199R-3_300 Winter 21.50 Chickpea - Hiremath_1328 loci - LG07 TA4L-TA199R-3_300 SSR 81.62 (cM) Automated name-based View Maps
Chickpea - Millan_555 loci - LG 4 TA4L-TA199R-3_300 RAPD 33.00 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 4 TA4L-TA199R-3_300 Winter 46.14 (cM) Automated name-based View Maps
TA4L-TA191R_291-284 Winter 26.40 Chickpea - Hiremath_1328 loci - LG07 TA4L-TA191R_291-284 SSR 69.48 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 4 TA4L-TA191R_291-284 Winter 27.18 (cM) Automated name-based View Maps
OPA14-1 Winter 29.60 Chickpea - Hiremath_1328 loci - LG07 OPA14-1 SSR 73.22 (cM) Automated name-based View Maps
Chickpea - Millan_555 loci - LG 4 OPA14-1 RAPD 24.00 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 4 OPA14-1 RAPD 56.50 (cM) Automated name-based View Maps
cpPb490431 DArT 33.30 No other positions
ISSR8231 Winter 41.80 Chickpea - Winter_354 loci - LG 4 ISSR8231 unknown marker 17.70 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG07 ISSR8231 35.22 (cM) Automated name-based View Maps
EST948 COS-SNP 43.90 Chickpea - Nayak_521 loci - LG 6 EST948 COS-SNP 159.50 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 6 EST948 COS-SNP 43.66 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG06 EST948 5.67 (cM) Automated name-based View Maps
MTU07 COS-SNP 45.70 Chickpea - Nayak_521 loci - LG 6 MTU07 COS-SNP 162.10 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG06 MTU07 0.00 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 6 MTU07 COS-SNP 40.63 (cM) Automated name-based View Maps
CGMM034 CAPS 49.70 Chickpea - Hiremath_1328 loci - LG06 CGMM034 23.71 (cM) Automated name-based View Maps
ISSR8902 Winter 52.20 Chickpea - Thudi_1291 loci - LG 4 ISSR8902 Winter 71.41 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 4 ISSR8902 unknown marker 128.50 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG07 ISSR8902 106.90 (cM) Automated name-based View Maps
CISR029 Conserved Intron Spanning Region 53.80 Chickpea - Hiremath_1328 loci - LG06 CISR029 Conserved Intron Spanning Region 25.76 (cM) Automated name-based View Maps
ISSR8401 Winter 57.00 Chickpea - Hiremath_1328 loci - LG07 ISSR8401 112.09 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 4 ISSR8401 Winter 71.98 (cM) Automated name-based View Maps
Chickpea - Winter_354 loci - LG 4 ISSR8401 unknown marker 122.00 (cM) Automated name-based View Maps
TGDH COS-SNP 60.20 Chickpea - Nayak_521 loci - LG 6 TGDH COS-SNP 117.80 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG06 TGDH 59.72 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 6 TGDH COS-SNP 95.12 (cM) Automated name-based View Maps
CISR041 Conserved Intron Spanning Region 61.00 Chickpea - Hiremath_1328 loci - LG06 CISR041 Conserved Intron Spanning Region 33.59 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 6 CISR041 Conserved Intron Spanning Region 65.13 (cM) Automated name-based View Maps
TC78756 COS-SNP 61.60 Chickpea - Hiremath_1328 loci - LG06 TC78756 36.99 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 6 TC78756 COS-SNP 66.39 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 6 TC78756 COS-SNP 142.20 (cM) Automated name-based View Maps
OPS13-3 Winter 66.30 Chickpea - Hiremath_1328 loci - LG07 OPS13-3 RAPD 91.96 (cM) Automated name-based View Maps
Chickpea - Millan_555 loci - LG 4 OPS13-3 RAPD 75.00 (cM) Automated name-based View Maps
ICCeM039 EST-SSR 68.00 Chickpea - Hiremath_1328 loci - LG06 ICCeM039 EST-SSR 48.29 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 6 ICCeM039 EST-SSR 73.15 (cM) Automated name-based View Maps
Chickpea - 1147 Transcript map(Seq-clone) - LG06 ICCeM039 SSR 75.54 (cM) Automated name-based View Maps
TRAL Winter 68.50 Chickpea - Nayak_521 loci - LG 6 TRAL COS-SNP 136.00 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 6 TRAL Winter 72.20 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG06 TRAL SSR 39.01 (cM) Automated name-based View Maps
CGMM020 CAPS 69.70 Chickpea - Hiremath_1328 loci - LG06 CGMM020 40.37 (cM) Automated name-based View Maps
TC79726 COS-SNP 70.20 Chickpea - Nayak_521 loci - LG 6 TC79726 COS-SNP 122.50 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 6 TC79726 COS-SNP 84.75 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG06 TC79726 50.21 (cM) Automated name-based View Maps
TC88598 COS-SNP 70.60 Chickpea - Nayak_521 loci - LG 6 TC88598 COS-SNP 135.40 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 6 TC88598 COS-SNP 75.69 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG06 TC88598 46.22 (cM) Automated name-based View Maps
ICCM0242a SSR 72.20 Chickpea - Hiremath_1328 loci - LG06 ICCM0242a 43.73 (cM) Automated name-based View Maps
Chickpea - 1147 Transcript map(Seq-clone) - LG06 ICCM0242a SSR 69.55 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 6 ICCM0242a SSR 76.74 (cM) Automated name-based View Maps
Chickpea - Varshney_168 loci - LG06 ICCM0242a SSR 34.79 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG06 ICCM0242a SSR 29.29 (cM) Automated name-based View Maps
ICCM0284a SSR 72.40 Chickpea - Hiremath_1328 loci - LG06 ICCM0284a 43.29 (cM) Automated name-based View Maps
Chickpea - 1147 Transcript map(Seq-clone) - LG06 ICCM0284a SSR 70.39 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 6 ICCM0284a SSR 76.89 (cM) Automated name-based View Maps