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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Chickpea-1147 Transcript map(Seq-clone)
(Reference Set)
Min.
Correspondences
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Maps LG02
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hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
CAPS
COS-SNP
SNP
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Chickpea - Transcript map with 1147 loci [ View Map Set Info ]
Map Name: LG02
Map Start: 0.00 cM
Map Stop: 84.23 cM
Features by Type:
2 CAPS
29 COS-SNP
80 SNP
3 SSR
114 Total

Map Features

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Items 1 to 25 of 114.       of 5 | Next
Chickpea - Transcript map with 1147 loci - LG02
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
CKaM1212 SNP 0.00 Chickpea - Hiremath_1328 loci - LG02 CKaM1212 53.84 (cM) Automated name-based View Maps
CKaM1855 SNP 0.07 Chickpea - Hiremath_1328 loci - LG02 CKaM1855 53.78 (cM) Automated name-based View Maps
CKaM1719 SNP 0.59 Chickpea - Hiremath_1328 loci - LG02 CKaM1719 54.09 (cM) Automated name-based View Maps
CKaM1975 SNP 1.66 Chickpea - Hiremath_1328 loci - LG02 CKaM1975 52.61 (cM) Automated name-based View Maps
CKaM1647 SNP 2.72 Chickpea - Hiremath_1328 loci - LG02 CKaM1647 55.86 (cM) Automated name-based View Maps
CKaM1494 SNP 2.79 Chickpea - Hiremath_1328 loci - LG02 CKaM1494 55.88 (cM) Automated name-based View Maps
CKaM1113 SNP 3.71 Chickpea - Hiremath_1328 loci - LG02 CKaM1113 56.76 (cM) Automated name-based View Maps
CKaM0948 SNP 3.73 Chickpea - Hiremath_1328 loci - LG02 CKaM0948 56.77 (cM) Automated name-based View Maps
CKaM1080 SNP 3.73 Chickpea - Hiremath_1328 loci - LG02 CKaM1080 56.78 (cM) Automated name-based View Maps
CKaM0796 SNP 3.74 Chickpea - Hiremath_1328 loci - LG02 CKaM0796 56.78 (cM) Automated name-based View Maps
CKaM1340 SNP 5.24 Chickpea - Hiremath_1328 loci - LG02 CKaM1340 58.69 (cM) Automated name-based View Maps
CKaM0791 SNP 5.25 Chickpea - Hiremath_1328 loci - LG02 CKaM0791 58.34 (cM) Automated name-based View Maps
CKaM0288 SNP 6.62 Chickpea - Hiremath_1328 loci - LG02 CKaM0288 58.27 (cM) Automated name-based View Maps
TOG961222 COS-SNP 7.33 Chickpea - Hiremath_1328 loci - LG02 TOG961222 92.94 (cM) Automated name-based View Maps
TOG903783 COS-SNP 10.10 Chickpea - Hiremath_1328 loci - LG02 TOG903783 85.60 (cM) Automated name-based View Maps
CKaM1382 SNP 12.41 Chickpea - Hiremath_1328 loci - LG02 CKaM1382 66.64 (cM) Automated name-based View Maps
CaM1135 SSR 16.82 Chickpea - Thudi_1291 loci - LG 2 CaM1135 BES-SSR 32.06 (cM) Automated name-based View Maps
CKaM0212 SNP 17.47 Chickpea - Hiremath_1328 loci - LG02 CKaM0212 72.18 (cM) Automated name-based View Maps
TOG903882 COS-SNP 18.17 Chickpea - Hiremath_1328 loci - LG02 TOG903882 77.71 (cM) Automated name-based View Maps
CKaM1463 SNP 19.94 Chickpea - Hiremath_1328 loci - LG02 CKaM1463 72.52 (cM) Automated name-based View Maps
CKaM0029 SNP 19.94 Chickpea - Hiremath_1328 loci - LG02 CKaM0029 72.55 (cM) Automated name-based View Maps
CKaM0921 SNP 19.96 Chickpea - Hiremath_1328 loci - LG02 CKaM0921 72.53 (cM) Automated name-based View Maps
CKaM1607 SNP 20.19 Chickpea - Hiremath_1328 loci - LG02 CKaM1607 72.13 (cM) Automated name-based View Maps
CKaM0860 SNP 20.21 Chickpea - Hiremath_1328 loci - LG02 CKaM0860 72.11 (cM) Automated name-based View Maps
CKaM1678 SNP 20.25 Chickpea - Hiremath_1328 loci - LG02 CKaM1678 72.13 (cM) Automated name-based View Maps