CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Chickpea-1147 Transcript map(Seq-clone)
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG03
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
CAPS
COS-SNP
SNP
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Chickpea - Transcript map with 1147 loci [ View Map Set Info ]
Map Name: LG03
Map Start: 0.00 cM
Map Stop: 66.23 cM
Features by Type:
1 CAPS
73 COS-SNP
5 SNP
44 SSR
123 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 123.       of 5 | Next
Chickpea - Transcript map with 1147 loci - LG03
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
CaM1581 SSR 0.00 Chickpea - Thudi_1291 loci - LG 3 CaM1581 BES-SSR 0.00 (cM) Automated name-based View Maps
CaM1149 SSR 0.87 Chickpea - Thudi_1291 loci - LG 3 CaM1149 BES-SSR 0.93 (cM) Automated name-based View Maps
CaM0799 SSR 2.45 Chickpea - Thudi_1291 loci - LG 3 CaM0799 BES-SSR 2.65 (cM) Automated name-based View Maps
CaM1007 SSR 5.53 Chickpea - Thudi_1291 loci - LG 3 CaM1007 BES-SSR 5.96 (cM) Automated name-based View Maps
CaM1337 SSR 6.05 Chickpea - Thudi_1291 loci - LG 3 CaM1337 BES-SSR 7.39 (cM) Automated name-based View Maps
CaM2045 SSR 7.81 Chickpea - Thudi_1291 loci - LG 3 CaM2045 BES-SSR 8.56 (cM) Automated name-based View Maps
CaM1542 SSR 8.19 Chickpea - Thudi_1291 loci - LG 3 CaM1542 BES-SSR 8.11 (cM) Automated name-based View Maps
CaM0790 SSR 8.60 Chickpea - Thudi_1291 loci - LG 3 CaM0790 BES-SSR 9.37 (cM) Automated name-based View Maps
CaM1714 SSR 9.22 Chickpea - Thudi_1291 loci - LG 3 CaM1714 BES-SSR 10.04 (cM) Automated name-based View Maps
CaM1668 SSR 9.70 Chickpea - Thudi_1291 loci - LG 3 CaM1668 BES-SSR 10.48 (cM) Automated name-based View Maps
CaM0632 SSR 9.79 Chickpea - Thudi_1291 loci - LG 3 CaM0632 BES-SSR 10.64 (cM) Automated name-based View Maps
CaM1079 SSR 9.91 Chickpea - Thudi_1291 loci - LG 3 CaM1079 BES-SSR 10.95 (cM) Automated name-based View Maps
CaM0751 SSR 9.95 Chickpea - Thudi_1291 loci - LG 3 CaM0751 BES-SSR 10.83 (cM) Automated name-based View Maps
CaM0519 SSR 10.65 Chickpea - Thudi_1291 loci - LG 3 CaM0519 BES-SSR 11.43 (cM) Automated name-based View Maps
CaM0260 SSR 11.33 Chickpea - Thudi_1291 loci - LG 3 CaM0260 BES-SSR 16.42 (cM) Automated name-based View Maps
ICCM0282c SSR 13.05 Chickpea - Hiremath_1328 loci - LG03 ICCM0282c 34.63 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 3 ICCM0282c SSR 17.55 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG03 ICCM0282c SSR 0.00 (cM) Automated name-based View Maps
CaM0600 SSR 13.88 Chickpea - Thudi_1291 loci - LG 3 CaM0600 BES-SSR 19.33 (cM) Automated name-based View Maps
CaM1358 SSR 14.36 Chickpea - Thudi_1291 loci - LG 3 CaM1358 BES-SSR 18.79 (cM) Automated name-based View Maps
TOG894098 COS-SNP 14.88 No other positions
CaM1132 SSR 15.42 Chickpea - Thudi_1291 loci - LG 3 CaM1132 BES-SSR 19.94 (cM) Automated name-based View Maps
ICCM0124 SSR 15.72 Chickpea - Gujaria_300 loci - LG03 ICCM0124 SSR 3.50 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 3 ICCM0124 SSR 21.06 (cM) Automated name-based View Maps
Chickpea - Nayak_521 loci - LG 3 ICCM0124 SSR 9.30 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG03 ICCM0124 38.59 (cM) Automated name-based View Maps
ICCM0159 SSR 19.83 Chickpea - Nayak_521 loci - LG 3 ICCM0159 SSR 96.40 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 3 ICCM0159 SSR 31.83 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG03 ICCM0159 SSR 9.40 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG03 ICCM0159 42.40 (cM) Automated name-based View Maps
CaM1129 SSR 20.67 Chickpea - Thudi_1291 loci - LG 3 CaM1129 BES-SSR 27.20 (cM) Automated name-based View Maps
Chickpea - Pushpavalli_56_loci - CaLG03 CaM1129 SSR 0.00 (cM) Automated name-based View Maps
ICCM0197a SSR 22.03 Chickpea - Thudi_1291 loci - LG 3 ICCM0197a SSR 28.85 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG03 ICCM0197a SSR 11.20 (cM) Automated name-based View Maps
Chickpea - Varshney_241 loci - LG07 ICCM0197a SSR 43.72 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG03 ICCM0197a 44.96 (cM) Automated name-based View Maps
Chickpea - Varshney_352 loci - LG07 ICCM0197a EST-SSR 52.37 (cM) Automated name-based View Maps
ICCM0062 SSR 22.22 Chickpea - Nayak_521 loci - LG 3 ICCM0062 SSR 96.90 (cM) Automated name-based View Maps
Chickpea - Hiremath_1328 loci - LG03 ICCM0062 44.63 (cM) Automated name-based View Maps
Chickpea - Thudi_1291 loci - LG 3 ICCM0062 SSR 28.71 (cM) Automated name-based View Maps
Chickpea - Gujaria_300 loci - LG03 ICCM0062 SSR 11.30 (cM) Automated name-based View Maps