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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Chickpea-1147 Transcript map(Seq-clone)
(Reference Set)
Min.
Correspondences
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Maps LG04
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hint: To save time, select the desired options before redrawing the map.
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 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
CAPS
COS-SNP
SNP
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Chickpea - Transcript map with 1147 loci [ View Map Set Info ]
Map Name: LG04
Map Start: 0.00 cM
Map Stop: 91.03 cM
Features by Type:
1 CAPS
67 COS-SNP
131 SNP
28 SSR
227 Total

Map Features

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Items 1 to 25 of 227.       of 10 | Next
Chickpea - Transcript map with 1147 loci - LG04
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
CKaM1209 SNP 0.00 Chickpea - Hiremath_1328 loci - LG04 CKaM1209 30.50 (cM) Automated name-based View Maps
CKaM0039 SNP 0.44 Chickpea - Hiremath_1328 loci - LG04 CKaM0039 31.01 (cM) Automated name-based View Maps
CKaM1405 SNP 0.76 Chickpea - Hiremath_1328 loci - LG04 CKaM1405 30.91 (cM) Automated name-based View Maps
CKaM1232 SNP 8.34 Chickpea - Hiremath_1328 loci - LG04 CKaM1232 90.54 (cM) Automated name-based View Maps
CKaM1063 SNP 8.47 Chickpea - Hiremath_1328 loci - LG04 CKaM1063 90.17 (cM) Automated name-based View Maps
CKaM0925 SNP 9.27 Chickpea - Hiremath_1328 loci - LG04 CKaM0925 89.91 (cM) Automated name-based View Maps
CKaM0880 SNP 9.76 Chickpea - Hiremath_1328 loci - LG04 CKaM0880 89.06 (cM) Automated name-based View Maps
CKaM1703 SNP 9.81 Chickpea - Hiremath_1328 loci - LG04 CKaM1703 89.04 (cM) Automated name-based View Maps
CKaM1043 SNP 9.89 Chickpea - Hiremath_1328 loci - LG04 CKaM1043 89.22 (cM) Automated name-based View Maps
TOG912749 COS-SNP 11.39 Chickpea - Hiremath_1328 loci - LG04 TOG912749 92.21 (cM) Automated name-based View Maps
TOG908396 COS-SNP 11.79 Chickpea - Hiremath_1328 loci - LG04 TOG908396 91.85 (cM) Automated name-based View Maps
CKaM0338 SNP 12.11 Chickpea - Hiremath_1328 loci - LG04 CKaM0338 89.05 (cM) Automated name-based View Maps
TOG899054 COS-SNP 12.11 Chickpea - Hiremath_1328 loci - LG04 TOG899054 91.70 (cM) Automated name-based View Maps
CKaM1349 SNP 14.42 Chickpea - Hiremath_1328 loci - LG04 CKaM1349 85.23 (cM) Automated name-based View Maps
CKaM1096 SNP 14.84 Chickpea - Hiremath_1328 loci - LG04 CKaM1096 84.99 (cM) Automated name-based View Maps
CKaM1471 SNP 15.33 Chickpea - Hiremath_1328 loci - LG04 CKaM1471 84.74 (cM) Automated name-based View Maps
CKaM1501 SNP 16.22 Chickpea - Hiremath_1328 loci - LG04 CKaM1501 83.18 (cM) Automated name-based View Maps
CKaM1502 SNP 16.23 Chickpea - Hiremath_1328 loci - LG04 CKaM1502 83.15 (cM) Automated name-based View Maps
CKaM0979 SNP 16.27 Chickpea - Hiremath_1328 loci - LG04 CKaM0979 83.16 (cM) Automated name-based View Maps
TOG896911 COS-SNP 17.59 Chickpea - Hiremath_1328 loci - LG04 TOG896911 86.23 (cM) Automated name-based View Maps
CKaM0434 SNP 18.64 Chickpea - Hiremath_1328 loci - LG04 CKaM0434 83.23 (cM) Automated name-based View Maps
TOG894321 COS-SNP 18.64 Chickpea - Hiremath_1328 loci - LG04 TOG894321 85.09 (cM) Automated name-based View Maps
TOG896976 COS-SNP 18.64 Chickpea - Hiremath_1328 loci - LG04 TOG896976 85.09 (cM) Automated name-based View Maps
TOG901729 COS-SNP 18.64 Chickpea - Hiremath_1328 loci - LG04 TOG901729 85.09 (cM) Automated name-based View Maps
TOG910567 COS-SNP 18.64 Chickpea - Hiremath_1328 loci - LG04 TOG910567 85.18 (cM) Automated name-based View Maps