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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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Map Set Groundnut-RIL-1
(Reference Set) 		Groundnut-RIL-8
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Maps RIL-1_LG15 RIL-8_LG04
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Feature Types:
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Correspondence		 Always Display
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Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Image Type: PNG JPEG GIF SVG *
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Size of Dot Plot Pixels: 1
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Same Scale:		 No Yes
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Menu Order of Comparative Maps: Predefined
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Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Groundnut - RIL-1 [ View Map Set Info ]
Map Name: RIL-1_LG15
Map Start: 0.00 cM
Map Stop: 67.60 cM
Features by Type:
5 SSR
5 Total

Map Features

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Items 1 to 5 of 5.
Groundnut - RIL-1 - RIL-1_LG15
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
GM641 SSR 0.00 Groundnut - Ref. consensus genetic map - a01 GM641 SSR 79.53 (cM) Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_a01 - RIL-1_LG15 GM641 SSR 0.00 (cM) Automated name-based View Maps
Groundnut - Consensus_Abiotic - LG15 GM641 SSR 0.00 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
GM2602 SSR 13.80 Groundnut - Ref. consensus genetic map - a01 GM2602 SSR 90.82 (cM) Automated name-based, Automated name-based View Maps
Groundnut - RIL-5 - RIL-5_LG19 GM2602 SSR 0.00 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_a01 - RIL-5_LG19 GM2602 SSR 0.00 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_a01 - RIL-1_LG15 GM2602 SSR 13.80 (cM) Automated name-based View Maps
Groundnut - Consensus_Abiotic - LG15 GM2602 SSR 13.80 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
GM2603 SSR 14.50 Groundnut - Ref. consensus genetic map - a01 GM2603 SSR 91.57 (cM) Automated name-based, Automated name-based View Maps
Groundnut - Consensus_Abiotic - LG15 GM2603 SSR 14.50 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_a01 - RIL-1_LG15 GM2603 SSR 14.50 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_a01 - RIL-5_LG19 GM2603 SSR 0.80 (cM) Automated name-based View Maps
Groundnut - RIL-5 - RIL-5_LG19 GM2603 SSR 0.80 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
seq16G08 SSR 31.90 Groundnut - Ref. consensus genetic map - a09 seq16G08 SSR 50.25 (cM) Automated name-based, Automated name-based View Maps
Groundnut - Consensus_Abiotic - LG15 seq16G08 SSR 31.90 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_a01 - RIL-8_LG8 seq16G08 SSR 33.90 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_a09 - RIL-10_LG9 seq16G08 SSR 17.40 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_a01 - RIL-5_LG19 seq16G08 SSR 14.80 (cM) Automated name-based View Maps
Groundnut - RIL-5 - RIL-5_LG19 seq16G08 SSR 14.80 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - Ref. consensus genetic map - a01 seq16G08 SSR 135.24 (cM) Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_a01 - RIL-1_LG15 seq16G08 SSR 31.90 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_a01 - RIL-7_LG8 seq16G08 SSR 0.00 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_a01 - RIL-6_LG8 seq16G08 SSR 16.20 (cM) Automated name-based View Maps
Groundnut - Ref. consensus genetic map - b01 seq16G08 SSR 273.39 (cM) Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_a01 - BC-1_a01 seq16G08 SSR 36.50 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_b01 - BC-1_b01 seq16G08 SSR 0.00 (cM) Automated name-based View Maps
TC4E10 SSR 67.60 Groundnut - combined_corresponding_b03 - RIL-8_LG4 TC4E10 SSR 3.90 (cM) Automated name-based View Maps
Groundnut - RIL-9 - RIL-9_LG03 TC4E10 SSR 39.10 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - Ref. consensus genetic map - b03 TC4E10 SSR 58.85 (cM) Automated name-based, Automated name-based View Maps
Groundnut - Ref. consensus genetic map - a01 TC4E10 SSR 171.01 (cM) Automated name-based, Automated name-based View Maps
Groundnut - Consensus_Abiotic - LG15 TC4E10 SSR 67.60 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - RIL-8 - RIL-8_LG04 TC4E10 SSR 13.20 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_a01 - RIL-1_LG15 TC4E10 SSR 67.60 (cM) Automated name-based View Maps