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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Groundnut-RIL-2
(Reference Set) 		Groundnut-combined_corresponding_b02
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Correspondences
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Maps RIL-2_LG02 BC-1_b02
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 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Groundnut - RIL-2 [ View Map Set Info ]
Map Name: RIL-2_LG02
Map Start: 0.00 cM
Map Stop: 63.50 cM
Features by Type:
5 SSR
5 Total

Map Features

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Items 1 to 5 of 5.
Groundnut - RIL-2 - RIL-2_LG02
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
RNoX681 SSR 0.00 Groundnut - Consensus_Abiotic - LG02 RNoX681 SSR 0.00 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
IPAHM596 SSR 24.30 Groundnut - Consensus_Abiotic - LG02 IPAHM596 SSR 24.30 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
IPAHM254 SSR 45.60 Groundnut - Consensus_Abiotic - LG02 IPAHM254 SSR 47.20 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - Ref. consensus genetic map - a02 IPAHM254 SSR 42.38 (cM) Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_a02 - RIL-3_LG2 IPAHM254 SSR 3.40 (cM) Automated name-based View Maps
Groundnut - RIL-3 - RIL-3 _LG02 IPAHM254 SSR 3.40 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
PM499 SSR 48.60 Groundnut - RIL-1 - RIL-1_LG02 PM499 SSR 41.90 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - Consensus_Abiotic - LG02 PM499 SSR 48.60 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - RIL-5 - RIL-5_LG02 PM499 SSR 15.30 (cM) Synteny, Automated name-based, Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_b02 - RIL-5_LG2 PM499 SSR 15.30 (cM) Automated name-based View Maps
Groundnut - Ref. consensus genetic map - b02 PM499 SSR 135.93 (cM) Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_b02 - RIL-1_LG2 PM499 SSR 41.90 (cM) Automated name-based View Maps
Groundnut - Consensus_Biotic - LG02 PM499 SSR 20.44 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
TC1E01 SSR 63.50 Groundnut - combined_corresponding_b02 - BC-1_b02 TC1E01 SSR 28.10 (cM) Automated name-based View Maps
Groundnut - RIL-4 - RIL-4_LG02 TC1E01 SSR 0.00 (cM) Synteny, Automated name-based, Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_a02 - BC-1_a02 TC1E01 SSR 24.30 (cM) Automated name-based View Maps
Groundnut - Ref. consensus genetic map - a02 TC1E01 SSR 86.94 (cM) Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_a02 - RIL-6_LG11 TC1E01 SSR 0.00 (cM) Automated name-based View Maps
Groundnut - RIL-6 - RIL-6_LG11 TC1E01 SSR 0.00 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - Consensus_Abiotic - LG02 TC1E01 SSR 63.50 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - Consensus_Biotic - LG02 TC1E01 SSR 0.00 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - Ref. consensus genetic map - b02 TC1E01 SSR 56.90 (cM) Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_b02 - RIL-4_LG2 TC1E01 SSR 0.00 (cM) Automated name-based View Maps