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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Groundnut-RIL-3
(Reference Set)
Min.
Correspondences
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Maps RIL-3 _LG01
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 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
SSR
Other
 
Show Labels: None Landmarks All
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Features:
No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Groundnut - RIL-3 [ View Map Set Info ]
Map Name: RIL-3 _LG01
Map Start: 0.00 cM
Map Stop: 19.50 cM
Features by Type:
4 SSR
4 Total

Map Features

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Items 1 to 4 of 4.
Groundnut - RIL-3 - RIL-3 _LG01
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
GM1959 SSR 0.00 Groundnut - Consensus_Abiotic - LG17 GM1959 SSR 24.60 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - RIL-5 - RIL-5_LG17 GM1959 SSR 67.40 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - Ref. consensus genetic map - b04 GM1959 SSR 101.34 (cM) Automated name-based, Automated name-based View Maps
Groundnut - RIL-9 - RIL-9_LG14 GM1959 SSR 63.10 (cM) Synteny, Automated name-based, Automated name-based, Automated name-based View Maps
Groundnut - RIL-4 - RIL-4_LG17 GM1959 SSR 47.20 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - RIL-10 - RIL-10_LG14 GM1959 SSR 36.50 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - Consensus_Biotic - LG17 GM1959 SSR 21.44 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_b04 - RIL-3_LG1 GM1959 SSR 0.00 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_b04 - RIL-5_LG17 GM1959 SSR 67.40 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_b04 - RIL-4_LG17 GM1959 SSR 47.20 (cM) Automated name-based View Maps
IPAHM97 SSR 8.10 Groundnut - combined_corresponding_b04 - RIL-3_LG1 IPAHM97 SSR 8.10 (cM) Automated name-based View Maps
Groundnut - Consensus_Abiotic - LG17 IPAHM97 SSR 32.70 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - Ref. consensus genetic map - b04 IPAHM97 SSR 66.68 (cM) Automated name-based, Automated name-based View Maps
S11 SSR 9.70 Groundnut - Consensus_Abiotic - LG17 S11 SSR 34.30 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - Ref. consensus genetic map - b04 S11 SSR 47.01 (cM) Automated name-based, Automated name-based View Maps
Groundnut - RIL-1 - RIL-1_LG17 S11 SSR 34.30 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_b04 - RIL-3_LG1 S11 SSR 9.70 (cM) Automated name-based View Maps
GM1445 SSR 19.50 Groundnut - RIL-9 - RIL-9_LG14 GM1445 SSR 63.10 (cM) Synteny, Automated name-based, Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_b04 - RIL-4_LG17 GM1445 SSR 56.90 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_b04 - RIL-3_LG1 GM1445 SSR 19.50 (cM) Automated name-based View Maps
Groundnut - RIL-5 - RIL-5_LG17 GM1445 SSR 107.50 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - RIL-4 - RIL-4_LG17 GM1445 SSR 56.90 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_b04 - RIL-5_LG17 GM1445 SSR 107.50 (cM) Automated name-based View Maps
Groundnut - Ref. consensus genetic map - b04 GM1445 SSR 44.80 (cM) Automated name-based, Automated name-based View Maps
Groundnut - Consensus_Abiotic - LG17 GM1445 SSR 44.10 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - Consensus_Biotic - LG17 GM1445 SSR 29.91 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_b04 - RIL-10_LG14 GM1445 SSR 20.50 (cM) Automated name-based View Maps