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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Groundnut-RIL-3
(Reference Set)
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Maps RIL-3 _LG04
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Groundnut - RIL-3 [ View Map Set Info ]
Map Name: RIL-3 _LG04
Map Start: 0.00 cM
Map Stop: 102.80 cM
Features by Type:
4 SSR
4 Total

Map Features

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Items 1 to 4 of 4.
Groundnut - RIL-3 - RIL-3 _LG04
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TC3E05 SSR 0.00 Groundnut - RIL-5 - RIL-5_LG12 TC3E05 SSR 19.30 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - RIL-4 - RIL-4_LG12 TC3E05 SSR 19.40 (cM) Synteny, Automated name-based, Automated name-based, Automated name-based View Maps
Groundnut - Consensus_Abiotic - LG04 TC3E05 SSR 241.57 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - Ref. consensus genetic map - b10 TC3E05 SSR 47.40 (cM) Automated name-based, Automated name-based View Maps
Groundnut - RIL-1 - RIL-1_LG04 TC3E05 SSR 181.30 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - Consensus_Biotic - LG12 TC3E05 SSR 9.72 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - RIL-7 - RIL-7_LG07 TC3E05 SSR 22.70 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
GM2032 SSR 30.40 Groundnut - Consensus_Biotic - LG12 GM2032 SSR 51.74 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - RIL-10 - RIL-10_LG16 GM2032 SSR 43.40 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - Consensus_Abiotic - LG04 GM2032 SSR 271.97 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - Ref. consensus genetic map - b10 GM2032 SSR 142.53 (cM) Automated name-based, Automated name-based View Maps
Groundnut - RIL-5 - RIL-5_LG12 GM2032 SSR 95.30 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
GM1483 SSR 51.80 Groundnut - Consensus_Abiotic - LG04 GM1483 SSR 293.37 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - RIL-5 - RIL-5_LG09 GM1483 SSR 0.00 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - RIL-4 - RIL-4_LG09 GM1483 SSR 0.00 (cM) Synteny, Automated name-based, Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_b09 - RIL-4_LG9 GM1483 SSR 0.00 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_b09 - RIL-5_LG9 GM1483 SSR 0.00 (cM) Automated name-based View Maps
Groundnut - Ref. consensus genetic map - b09 GM1483 SSR 0.00 (cM) Automated name-based, Automated name-based View Maps
Groundnut - Consensus_Biotic - LG09 GM1483 SSR 0.00 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - Ref. consensus genetic map - b10 GM1483 SSR 155.89 (cM) Automated name-based, Automated name-based View Maps
Groundnut - RIL-10 - RIL-10_LG16 GM1483 SSR 62.80 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
GM723 SSR 102.80 Groundnut - RIL-2 - RIL-2_LG04 GM723 SSR 112.30 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - Consensus_Abiotic - LG04 GM723 SSR 134.27 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps