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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Groundnut-RIL-3
(Reference Set)
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Correspondences
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Maps RIL-3 _LG11
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 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Groundnut - RIL-3 [ View Map Set Info ]
Map Name: RIL-3 _LG11
Map Start: 0.00 cM
Map Stop: 89.70 cM
Features by Type:
4 SSR
4 Total

Map Features

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Items 1 to 4 of 4.
Groundnut - RIL-3 - RIL-3 _LG11
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
seq2D12B SSR 0.00 Groundnut - RIL-10 - RIL-10_LG21 seq2D12B SSR 0.00 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - Consensus_Abiotic - LG19 seq2D12B SSR 0.00 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - RIL-5 - RIL-5_LG02 seq2D12B SSR 38.50 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_b02 - RIL-4_LG2 seq2D12B SSR 32.00 (cM) Automated name-based View Maps
Groundnut - RIL-2 - RIL-2_LG19 seq2D12B SSR 0.00 (cM) Synteny, Automated name-based, Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_b02 - RIL-9_LG21 seq2D12B SSR 0.00 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_b02 - RIL-5_LG2 seq2D12B SSR 38.50 (cM) Automated name-based View Maps
Groundnut - RIL-4 - RIL-4_LG02 seq2D12B SSR 32.00 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - Ref. consensus genetic map - b02 seq2D12B SSR 134.63 (cM) Automated name-based, Automated name-based View Maps
Groundnut - Consensus_Biotic - LG02 seq2D12B SSR 29.91 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
GM2547 SSR 18.80 Groundnut - RIL-2 - RIL-2_LG19 GM2547 SSR 1.40 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - Consensus_Abiotic - LG19 GM2547 SSR 10.10 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
GM625 SSR 58.20 Groundnut - Consensus_Abiotic - LG19 GM625 SSR 49.50 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_b02 - RIL-10_LG12 GM625 SSR 35.40 (cM) Automated name-based View Maps
Groundnut - RIL-2 - RIL-2_LG15 GM625 SSR 0.00 (cM) Synteny, Automated name-based, Automated name-based, Automated name-based View Maps
Groundnut - RIL-9 - RIL-9_LG12 GM625 SSR 39.90 (cM) Synteny, Automated name-based, Automated name-based, Automated name-based View Maps
Groundnut - Ref. consensus genetic map - b02 GM625 SSR 3.30 (cM) Automated name-based, Automated name-based View Maps
Groundnut - RIL-1 - RIL-1_LG22 GM625 SSR 29.70 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
IPAHM569 SSR 89.70 Groundnut - RIL-1 - RIL-1_LG19 IPAHM569 SSR 0.00 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - RIL-1 - RIL-1_LG22 IPAHM569 SSR 0.00 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_b02 - RIL-10_LG12 IPAHM569 SSR 38.90 (cM) Automated name-based View Maps
Groundnut - Ref. consensus genetic map - b02 IPAHM569 SSR 0.00 (cM) Automated name-based, Automated name-based View Maps
Groundnut - RIL-9 - RIL-9_LG12 IPAHM569 SSR 39.90 (cM) Synteny, Automated name-based, Automated name-based, Automated name-based View Maps
Groundnut - Consensus_Abiotic - LG19 IPAHM569 SSR 80.10 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps