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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Groundnut-RIL-3
(Reference Set)
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Maps RIL-3 _LG13
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Map Size: tiny small medium large Custom
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Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Groundnut - RIL-3 [ View Map Set Info ]
Map Name: RIL-3 _LG13
Map Start: 0.00 cM
Map Stop: 8.40 cM
Features by Type:
2 SSR
2 Total

Map Features

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Items 1 to 2 of 2.
Groundnut - RIL-3 - RIL-3 _LG13
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TC3E02 SSR 0.00 Groundnut - combined_corresponding_a09 - RIL-4_LG13 TC3E02 SSR 117.80 (cM) Automated name-based View Maps
Groundnut - RIL-6 - RIL-6_LG04 TC3E02 SSR 56.80 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_b03 - RIL-6_LG4 TC3E02 SSR 88.70 (cM) Automated name-based View Maps
Groundnut - RIL-4 - RIL-4_LG13 TC3E02 SSR 117.80 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_a09 - RIL-1_LG13 TC3E02 SSR 232.40 (cM) Automated name-based View Maps
Groundnut - Ref. consensus genetic map - a03 TC3E02 SSR 76.29 (cM) Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_b03 - BC-1_b11 TC3E02 SSR 0.00 (cM) Automated name-based View Maps
Groundnut - Ref. consensus genetic map - b03 TC3E02 SSR 10.15 (cM) Automated name-based, Automated name-based View Maps
Groundnut - RIL-9 - RIL-9_LG13 TC3E02 SSR 127.20 (cM) Synteny, Automated name-based, Automated name-based, Automated name-based View Maps
Groundnut - RIL-1 - RIL-1_LG13 TC3E02 SSR 232.40 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - Consensus_Abiotic - LG13 TC3E02 SSR 220.39 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - RIL-7 - RIL-7_LG12 TC3E02 SSR 13.40 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - Ref. consensus genetic map - a09 TC3E02 SSR 251.62 (cM) Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_b03 - RIL-10_LG13 TC3E02 SSR 111.96 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_a03 - BC-1_a03 TC3E02 SSR 57.40 (cM) Automated name-based View Maps
Groundnut - Consensus_Biotic - LG13 TC3E02 SSR 73.86 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - RIL-5 - RIL-5_LG13 TC3E02 SSR 156.50 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_a09 - RIL-5_LG13 TC3E02 SSR 156.50 (cM) Automated name-based View Maps
GM1609 SSR 8.40 Groundnut - RIL-5 - RIL-5_LG13 GM1609 SSR 169.70 (cM) Synteny, Automated name-based, Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_a09 - RIL-1_LG13 GM1609 SSR 248.20 (cM) Automated name-based View Maps
Groundnut - Consensus_Biotic - LG13 GM1609 SSR 85.65 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - RIL-1 - RIL-1_LG13 GM1609 SSR 248.20 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - Consensus_Abiotic - LG13 GM1609 SSR 236.19 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_a09 - RIL-5_LG13 GM1609 SSR 169.70 (cM) Automated name-based View Maps
Groundnut - Ref. consensus genetic map - a09 GM1609 SSR 267.42 (cM) Automated name-based, Automated name-based View Maps