CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Groundnut-RIL-6
(Reference Set)
Groundnut-Ref. consensus genetic map
Min.
Correspondences
Align Vertically
Stack
Maps RIL-6_LG04 b03
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
bin1
bin10
bin11
bin12
bin13
bin14
bin2
bin3
bin4
bin5
bin6
bin7
bin8
bin9
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Groundnut - RIL-6 [ View Map Set Info ]
Map Name: RIL-6_LG04
Map Start: 0.00 cM
Map Stop: 56.80 cM
Features by Type:
10 SSR
10 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 10 of 10.
Groundnut - RIL-6 - RIL-6_LG04
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
PM31 SSR 1.40 Groundnut - Ref. consensus genetic map - b03 PM31 SSR 155.82 (cM) Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_b03 - RIL-6_LG4 PM31 SSR 0.00 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_b03 - RIL-8_LG4 PM31 SSR 26.50 (cM) Automated name-based View Maps
Groundnut - RIL-8 - RIL-8_LG04 PM31 SSR 25.90 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - RIL-7 - RIL-7_LG04 PM31 SSR 8.50 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_b03 - RIL-7_LG4 PM31 SSR 20.10 (cM) Automated name-based View Maps
TC1E06 SSR 4.40 Groundnut - RIL-1 - RIL-1_LG03 TC1E06 SSR 10.40 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - Consensus_Abiotic - LG03 TC1E06 SSR 10.40 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - Ref. consensus genetic map - a03 TC1E06 SSR 92.28 (cM) Automated name-based, Automated name-based View Maps
Groundnut - RIL-10 - RIL-10_LG03 TC1E06 SSR 0.00 (cM) Synteny, Automated name-based, Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_a03 - RIL-1_LG3 TC1E06 SSR 10.40 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_a03 - BC-1_a03 TC1E06 SSR 41.50 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_b03 - RIL-6_LG4 TC1E06 SSR 10.20 (cM) Automated name-based View Maps
Groundnut - Ref. consensus genetic map - b03 TC1E06 SSR 202.71 (cM) Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_a03 - RIL-9_LG3 TC1E06 SSR 0.00 (cM) Automated name-based View Maps
RN17B08 SSR 7.40 Groundnut - Ref. consensus genetic map - b03 RN17B08 SSR 204.48 (cM) Automated name-based, Automated name-based View Maps
Groundnut - RIL-7 - RIL-7_LG04 RN17B08 SSR 19.70 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_b03 - RIL-7_LG4 RN17B08 SSR 34.30 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_b03 - RIL-6_LG4 RN17B08 SSR 16.70 (cM) Automated name-based View Maps
PM238 SSR 13.20 Groundnut - RIL-10 - RIL-10_LG03 PM238 SSR 18.70 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_a03 - BC-1_a03 PM238 SSR 34.40 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_a03 - RIL-3_LG3 PM238 SSR 34.30 (cM) Automated name-based View Maps
Groundnut - RIL-3 - RIL-3 _LG03 PM238 SSR 34.30 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_b03 - RIL-6_LG4 PM238 SSR 16.70 (cM) Automated name-based View Maps
Groundnut - Ref. consensus genetic map - b03 PM238 SSR 204.48 (cM) Automated name-based, Automated name-based View Maps
Groundnut - Ref. consensus genetic map - a03 PM238 SSR 157.59 (cM) Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_b03 - BC-1_b03 PM238 SSR 0.50 (cM) Automated name-based View Maps
Groundnut - RIL-10 - RIL-10_LG13 PM238 SSR 75.90 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_b03 - RIL-9_LG13 PM238 SSR 63.30 (cM) Automated name-based View Maps
Groundnut - Consensus_Abiotic - LG03 PM238 SSR 113.39 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_a03 - RIL-9_LG3 PM238 SSR 18.20 (cM) Automated name-based View Maps
seq3F5 SSR 17.70 No other positions
Ah-590 SSR 22.50 Groundnut - combined_corresponding_b03 - RIL-6_LG4 Ah-590 SSR 28.10 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_b03 - RIL-7_LG4 Ah-590 SSR 16.70 (cM) Automated name-based View Maps
Groundnut - RIL-7 - RIL-7_LG04 Ah-590 SSR 2.50 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - Ref. consensus genetic map - b03 Ah-590 SSR 231.44 (cM) Automated name-based, Automated name-based View Maps
seq2H8 SSR 24.80 Groundnut - RIL-7 - RIL-7_LG04 seq2H8 SSR 0.00 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
TC2A02 SSR 32.20 Groundnut - RIL-9 - RIL-9_LG13 TC2A02 SSR 127.20 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - RIL-1 - RIL-1_LG14 TC2A02 SSR 110.00 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - Consensus_Abiotic - LG14 TC2A02 SSR 110.00 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_b03 - RIL-6_LG4 TC2A02 SSR 56.90 (cM) Automated name-based View Maps
Groundnut - Ref. consensus genetic map - b03 TC2A02 SSR 8.55 (cM) Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_b03 - RIL-1_LG14 TC2A02 SSR 110.00 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_b03 - BC-1_b11 TC2A02 SSR 4.20 (cM) Automated name-based View Maps
Groundnut - RIL-7 - RIL-7_LG12 TC2A02 SSR 0.00 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
seq2B10 SSR 41.50 Groundnut - combined_corresponding_b03 - RIL-6_LG4 seq2B10 SSR 73.40 (cM) Automated name-based View Maps
Groundnut - RIL-4 - RIL-4_LG15 seq2B10 SSR 55.90 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_b03 - RIL-5_LG15 seq2B10 SSR 61.10 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_b03 - RIL-4_LG15 seq2B10 SSR 55.90 (cM) Automated name-based View Maps
Groundnut - RIL-5 - RIL-5_LG15 seq2B10 SSR 61.10 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - Consensus_Biotic - LG15 seq2B10 SSR 34.54 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - Ref. consensus genetic map - b03 seq2B10 SSR 236.51 (cM) Automated name-based, Automated name-based View Maps
TC3E02 SSR 56.80 Groundnut - combined_corresponding_a09 - RIL-1_LG13 TC3E02 SSR 232.40 (cM) Automated name-based View Maps
Groundnut - RIL-1 - RIL-1_LG13 TC3E02 SSR 232.40 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - Ref. consensus genetic map - a09 TC3E02 SSR 251.62 (cM) Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_b03 - RIL-6_LG4 TC3E02 SSR 88.70 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_a03 - BC-1_a03 TC3E02 SSR 57.40 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_a09 - RIL-5_LG13 TC3E02 SSR 156.50 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_b03 - BC-1_b11 TC3E02 SSR 0.00 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_b03 - RIL-10_LG13 TC3E02 SSR 111.96 (cM) Automated name-based View Maps
Groundnut - Consensus_Abiotic - LG13 TC3E02 SSR 220.39 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - RIL-9 - RIL-9_LG13 TC3E02 SSR 127.20 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - RIL-4 - RIL-4_LG13 TC3E02 SSR 117.80 (cM) Synteny, Automated name-based, Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_a09 - RIL-4_LG13 TC3E02 SSR 117.80 (cM) Automated name-based View Maps
Groundnut - Ref. consensus genetic map - a03 TC3E02 SSR 76.29 (cM) Automated name-based, Automated name-based View Maps
Groundnut - Ref. consensus genetic map - b03 TC3E02 SSR 10.15 (cM) Automated name-based, Automated name-based View Maps
Groundnut - RIL-7 - RIL-7_LG12 TC3E02 SSR 13.40 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - Consensus_Biotic - LG13 TC3E02 SSR 73.86 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - RIL-5 - RIL-5_LG13 TC3E02 SSR 156.50 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - RIL-3 - RIL-3 _LG13 TC3E02 SSR 0.00 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps