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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Groundnut-RIL-8
(Reference Set)
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Correspondences
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Maps RIL-8_LG02
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Map Size: tiny small medium large Custom
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Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Groundnut - RIL-8 [ View Map Set Info ]
Map Name: RIL-8_LG02
Map Start: 0.00 cM
Map Stop: 25.80 cM
Features by Type:
3 SSR
3 Total

Map Features

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Items 1 to 3 of 3.
Groundnut - RIL-8 - RIL-8_LG02
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TC3B04 SSR 0.00 Groundnut - Ref. consensus genetic map - b07 TC3B04 SSR 101.42 (cM) Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_b07 - BC-1_b07 TC3B04 SSR 34.40 (cM) Automated name-based View Maps
Groundnut - Ref. consensus genetic map - a08 TC3B04 SSR 113.23 (cM) Automated name-based, Automated name-based View Maps
Groundnut - RIL-7 - RIL-7_LG02 TC3B04 SSR 52.60 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_a08 - RIL-6_LG2 TC3B04 SSR 50.20 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_a08 - RIL-7_LG2 TC3B04 SSR 47.40 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_a08 - BC-1_a08 TC3B04 SSR 10.20 (cM) Automated name-based View Maps
Groundnut - RIL-6 - RIL-6_LG02 TC3B04 SSR 62.20 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
TC2G05 SSR 21.60 Groundnut - combined_corresponding_b07 - RIL-4_LG18 TC2G05 SSR 21.30 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_b07 - RIL-5_LG18 TC2G05 SSR 20.10 (cM) Automated name-based View Maps
Groundnut - RIL-4 - RIL-4_LG18 TC2G05 SSR 21.30 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - RIL-5 - RIL-5_LG18 TC2G05 SSR 20.10 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - Consensus_Biotic - LG18 TC2G05 SSR 7.66 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - Ref. consensus genetic map - b07 TC2G05 SSR 94.06 (cM) Automated name-based, Automated name-based View Maps
TC11F12 SSR 25.80 Groundnut - Consensus_Biotic - LG18 TC11F12 SSR 0.00 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_b07 - RIL-5_LG18 TC11F12 SSR 0.00 (cM) Automated name-based View Maps
Groundnut - Ref. consensus genetic map - a08 TC11F12 SSR 131.95 (cM) Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_a03 - RIL-3_LG3 TC11F12 SSR 40.00 (cM) Automated name-based View Maps
Groundnut - Ref. consensus genetic map - a03 TC11F12 SSR 205.00 (cM) Automated name-based, Automated name-based View Maps
Groundnut - Ref. consensus genetic map - b07 TC11F12 SSR 114.37 (cM) Automated name-based, Automated name-based View Maps
Groundnut - RIL-1 - RIL-1_LG03 TC11F12 SSR 14.70 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_b07 - RIL-4_LG18 TC11F12 SSR 0.00 (cM) Automated name-based View Maps
Groundnut - RIL-6 - RIL-6_LG02 TC11F12 SSR 79.90 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - RIL-3 - RIL-3 _LG03 TC11F12 SSR 40.00 (cM) Synteny, Automated name-based, Automated name-based, Automated name-based View Maps
Groundnut - RIL-4 - RIL-4_LG18 TC11F12 SSR 0.00 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_a08 - RIL-6_LG2 TC11F12 SSR 68.40 (cM) Automated name-based View Maps
Groundnut - Consensus_Abiotic - LG03 TC11F12 SSR 119.09 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - RIL-5 - RIL-5_LG18 TC11F12 SSR 0.00 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_a03 - RIL-1_LG3 TC11F12 SSR 14.70 (cM) Automated name-based View Maps