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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Groundnut-RIL-8
(Reference Set)
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Correspondences
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Maps RIL-8_LG07
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Map Size: tiny small medium large Custom
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Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Groundnut - RIL-8 [ View Map Set Info ]
Map Name: RIL-8_LG07
Map Start: 0.00 cM
Map Stop: 20.10 cM
Features by Type:
3 SSR
3 Total

Map Features

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Items 1 to 3 of 3.
Groundnut - RIL-8 - RIL-8_LG07
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TC7H11 SSR 0.00 Groundnut - combined_corresponding_a10 - RIL-1_LG12 TC7H11 SSR 70.40 (cM) Automated name-based View Maps
Groundnut - RIL-5 - RIL-5_LG12 TC7H11 SSR 27.60 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_b10 - RIL-5_LG12 TC7H11 SSR 27.60 (cM) Automated name-based View Maps
Groundnut - Ref. consensus genetic map - a10 TC7H11 SSR 67.15 (cM) Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_a10 - RIL-2_LG12 TC7H11 SSR 0.00 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_a10 - RIL-7_LG10 TC7H11 SSR 22.60 (cM) Automated name-based View Maps
Groundnut - RIL-7 - RIL-7_LG10 TC7H11 SSR 23.40 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - RIL-1 - RIL-1_LG12 TC7H11 SSR 70.40 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - RIL-2 - RIL-2_LG12 TC7H11 SSR 0.00 (cM) Synteny, Automated name-based, Automated name-based, Automated name-based View Maps
Groundnut - Ref. consensus genetic map - b10 TC7H11 SSR 54.88 (cM) Automated name-based, Automated name-based View Maps
Groundnut - Consensus_Biotic - LG12 TC7H11 SSR 14.38 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - Consensus_Abiotic - LG12 TC7H11 SSR 70.40 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_b10 - RIL-4_LG12 TC7H11 SSR 24.20 (cM) Automated name-based View Maps
Groundnut - RIL-4 - RIL-4_LG12 TC7H11 SSR 23.20 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_a10 - RIL-8_LG7 TC7H11 SSR 0.00 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_b10 - RIL-6_LG7 TC7H11 SSR 0.00 (cM) Automated name-based View Maps
AC2B03 SSR 8.00 Groundnut - Ref. consensus genetic map - a10 AC2B03 SSR 76.37 (cM) Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_a10 - RIL-8_LG7 AC2B03 SSR 5.80 (cM) Automated name-based View Maps
Groundnut - RIL-7 - RIL-7_LG07 AC2B03 SSR 29.60 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_a10 - BC-1_a10 AC2B03 SSR 9.70 (cM) Automated name-based View Maps
Groundnut - Ref. consensus genetic map - b10 AC2B03 SSR 44.40 (cM) Automated name-based, Automated name-based View Maps
Groundnut - RIL-10 - RIL-10_LG16 AC2B03 SSR 13.80 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - RIL-6 - RIL-6_LG07 AC2B03 SSR 15.20 (cM) Synteny, Automated name-based, Automated name-based, Automated name-based View Maps
GA131 SSR 20.10 Groundnut - Ref. consensus genetic map - b10 GA131 SSR 62.13 (cM) Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_a10 - RIL-8_LG7 GA131 SSR 15.00 (cM) Automated name-based View Maps
Groundnut - RIL-7 - RIL-7_LG07 GA131 SSR 11.60 (cM) Synteny, Automated name-based, Automated name-based, Automated name-based View Maps
Groundnut - RIL-6 - RIL-6_LG07 GA131 SSR 27.30 (cM) Synteny, Automated name-based, Automated name-based, Automated name-based View Maps
Groundnut - Ref. consensus genetic map - a10 GA131 SSR 84.57 (cM) Automated name-based, Automated name-based View Maps