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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Groundnut-RIL-9
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps RIL-9_LG20
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Groundnut - RIL-9 [ View Map Set Info ]
Map Name: RIL-9_LG20
Map Start: 0.00 cM
Map Stop: 11.20 cM
Features by Type:
2 SSR
2 Total

Map Features

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Items 1 to 2 of 2.
Groundnut - RIL-9 - RIL-9_LG20
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
GM2007 SSR 11.20 Groundnut - RIL-10 - RIL-10_LG23 GM2007 SSR 13.50 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - RIL-2 - RIL-2_LG20 GM2007 SSR 19.40 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
Groundnut - Ref. consensus genetic map - a03 GM2007 SSR 19.40 (cM) Automated name-based, Automated name-based View Maps
Groundnut - combined_corresponding_a03 - RIL-2_LG20 GM2007 SSR 19.40 (cM) Automated name-based View Maps
Groundnut - Consensus_Abiotic - LG03 GM2007 SSR 206.53 (cM) Automated name-based, Synteny, Automated name-based, Automated name-based View Maps
GM1840 SSR 11.20 No other positions