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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Groundnut-BC-1
(Reference Set)
Min.
Correspondences
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Maps BC-1_a01
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hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Groundnut - BC-1 [ View Map Set Info ]
Map Name: BC-1_a01
Map Start: 0.00 cM
Map Stop: 56.20 cM
Features by Type:
37 SSR
37 Total

Map Features

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Items 1 to 25 of 37.       of 2 | Next
Groundnut - BC-1 - BC-1_a01
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
gi-0919_A SSR 56.20 No other positions
TC2E05_A SSR 54.60 No other positions
IPAHM287_A SSR 52.00 No other positions
IPAHM177_A SSR 41.20 No other positions
Ah3TC23F04_A2 SSR 40.40 Groundnut - combined_corresponding_a01 - BC-1_a01 Ah3TC23F04_A2 SSR 40.40 (cM) Automated name-based View Maps
Groundnut - Ref. consensus genetic map - a01 Ah3TC23F04_A2 SSR 139.14 (cM) Automated name-based View Maps
Seq16G08_A SSR 36.50 No other positions
RN9A05_A SSR 31.90 No other positions
RN23A07_A SSR 31.90 No other positions
IPAHM531_A SSR 25.80 No other positions
Ah3TC38C01_A SSR 24.40 No other positions
Ai119C17_A SSR 23.80 No other positions
RN11A07_A SSR 23.20 No other positions
Ad92L24_A SSR 22.60 No other positions
Ah126_A SSR 22.00 No other positions
Ah21_A SSR 22.00 No other positions
Seq4B09_A SSR 22.00 No other positions
Seq13A10_A SSR 21.40 No other positions
TC4H02_A SSR 21.40 No other positions
Ah594_A3 SSR 21.40 Groundnut - Ref. consensus genetic map - a01 Ah594_A3 SSR 76.94 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_a01 - BC-1_a01 Ah594_A3 SSR 21.40 (cM) Automated name-based View Maps
TC2D06_A SSR 21.40 No other positions
Seq3E05_A SSR 21.40 No other positions
Seq19C03_A SSR 21.40 No other positions
Ah3TC36D11_A SSR 21.40 No other positions
TC1D01_A SSR 21.40 No other positions
Ah193_A SSR 21.40 No other positions