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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Groundnut-BC-1
(Reference Set) 		Groundnut-combined_corresponding_b03
Min.
Correspondences
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Maps BC-1_b03 BC-1_b03
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hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Groundnut - BC-1 [ View Map Set Info ]
Map Name: BC-1_b03
Map Start: 0.00 cM
Map Stop: 41.90 cM
Features by Type:
12 SSR
12 Total

Map Features

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Items 1 to 12 of 12.
Groundnut - BC-1 - BC-1_b03
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Seq19D09_B SSR 41.90 No other positions
TC7E04_B SSR 40.80 No other positions
IPAHM093_B SSR 35.40 No other positions
seq14C11_B SSR 29.90 No other positions
PM003_B SSR 19.50 No other positions
RM14H12_B SSR 17.20 No other positions
seq9E08_B2 SSR 16.60 Groundnut - Ref. consensus genetic map - b03 seq9E08_B2 SSR 161.43 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_b03 - BC-1_b03 seq9E08_B2 SSR 16.60 (cM) Automated name-based View Maps
PM201_B SSR 16.60 No other positions
Seq19H03_B1 SSR 16.60 Groundnut - combined_corresponding_b03 - BC-1_b03 seq19H03_B1 SSR 16.60 (cM) Automated name-based View Maps
Groundnut - Ref. consensus genetic map - b03 seq19H03_B1 SSR 183.33 (cM) Automated name-based View Maps
Ah3TC40C03_B1 SSR 10.00 Groundnut - Ref. consensus genetic map - b03 Ah3TC40C03_B1 SSR 200.70 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_b03 - BC-1_b03 Ah3TC40C03_B1 SSR 10.00 (cM) Automated name-based View Maps
PM238_B SSR 0.50 No other positions
AC1G11_B SSR 0.00 No other positions