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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Groundnut-BC-1
(Reference Set)
Min.
Correspondences
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Maps BC-1_a04
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hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Groundnut - BC-1 [ View Map Set Info ]
Map Name: BC-1_a04
Map Start: 0.00 cM
Map Stop: 57.80 cM
Features by Type:
20 SSR
20 Total

Map Features

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Items 1 to 20 of 20.
Groundnut - BC-1 - BC-1_a04
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
RN12E01_A SSR 0.00 No other positions
Ah3TC13G05_A SSR 0.60 No other positions
Ah3TC39A10_A SSR 4.80 No other positions
Ah569_A SSR 6.00 No other positions
Ah408_A SSR 6.50 No other positions
Ah594_A1 SSR 14.90 Groundnut - combined_corresponding_a04 - BC-1_a04 Ah594_A1 SSR 14.90 (cM) Automated name-based View Maps
Groundnut - Ref. consensus genetic map - a04 Ah594_A1 SSR 122.29 (cM) Automated name-based View Maps
IPAHM108_A SSR 21.40 No other positions
PM120_A SSR 22.50 No other positions
TC9E08_A2 SSR 33.20 No other positions
Ah3TC39B04_A SSR 33.80 No other positions
RN35B05_A SSR 34.50 No other positions
Seq3B10_A SSR 34.50 No other positions
Seq18A08_A3 SSR 34.50 Groundnut - Ref. consensus genetic map - a04 seq18A08_A3 SSR 102.29 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_a04 - BC-1_a04 seq18A08_A3 SSR 34.50 (cM) Automated name-based View Maps
gi_0832_A SSR 34.50 No other positions
RM17H09_A SSR 35.40 No other positions
seq12E10_A SSR 41.00 No other positions
TC9E08_A1 SSR 42.90 No other positions
Ah229_A SSR 49.60 No other positions
TC11B04_A1 SSR 52.90 No other positions
TC7G10_A SSR 57.80 No other positions